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Report for CCDS51839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51839.1 Public Mus musculus 6 Aplf 23 108 98 CCDS HistoryNCBI Gene:72103Re-query CCDS DB by CCDS ID:51839.1Re-query CCDS DB by GeneID:72103See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032130.7 ENSMUSP00000032130.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032130.7Link to Ensembl Protein Viewer:ENSMUSP00000032130.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000032130Re-query CCDS DB by Protein ID:ENSMUSP00000032130
Original member Current member NCBI NM_001170489.1 NP_001163960.1 Accepted alive Link to Nucleotide Sequence:NM_001170489.1Link to Protein Sequence:NP_001163960.1Re-query CCDS DB by Nucleotide ID:NM_001170489Re-query CCDS DB by Protein ID:NP_001163960Link to BLAST:NP_001163960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163960.1 499 Q9D842-1 499 100% 0 0

Chromosomal Locations for CCDS 51839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87629900 87629921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87630016 87630175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87636930 87636976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87641890 87642015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87646014 87646351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87653708 87653892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87658433 87658565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87658841 87658988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87663685 87663857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87668416 87668487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87671860 87671955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGCCTTCGGACTTCTTTCTGCAGCCTCTGGACGGCGGTCCCCGCGTGCCCGTGGGGCCGGGGCAGACTG
TGATAGGCCGCGGGCCGCTGCTGGGAATAACAGACAAAAGAGTATCCAGAAGACATGCCATTCTTGAAGT
GGTTGATAGTCAGCTTCGAATCAAGCCAATCCATAGGAATCCATGTTTCTACCAGTCCTCGGAGAAGAGC
CAACACTCGCCAATGGAGACGCAAGTGTGGAGCCAGTTGCATCCCGGGGATAGCTTTTCCCTGTTACTTG
ACAAGTACGCTTTCCGTGTTTTCTCTGCAGAATCTGAAGTGGAGATGGAGTGTACTCTGAGAAACAGTCA
GATGCTTGATGAAGATGATATATTGAGTGAGATGCAGAAGTCCCCTGTGGTTAACTTACCTGATAAGACA
ACTGGTGCCTCACAGCTGCAAGGAAGCCCTGAAATAACCAAGACCAAGTGTCCCACCATAGATCCTATGT
CCTCTTCAGGTGAATGCAGAGCTTTCAGTGAGCACCAGCCACGTCCTACCCAGAGGAAAAGAATCCTCCC
AGCTTGGATGTTGGCGGAAAGTCTAAGTGACCAGAGCCTCTCCACACCAGCTGAGGGGGGAGATAAGGAT
GTCATCCAGAGGAGTGGAAAAGCAGGAACCTGTGAAGATAGAACCCCAGGAAACACATCATGGCATGGGA
AAAAGCGGCTTAGTCCATCAGGAAATTCAAAAAGTGTGTCAGCGGAACAAGACCCTGGGAAGAAGTGCAG
AAAGGCTGACCAAGAAGGACCGGGTGTTTCTTCTGAGAATGTTCCAGAATCATCATCTTCAAACATAGTA
AAGGACCCAGATGTGGATATTGTGAAGACAAATAAACAGAAGGACGGGATTTTAATAGAGGAACTTGGTG
AGGTCTCTAAACATAAAGCCGCCACCAAACCAACCACAAATGAAGAGGGCGAGAGTTGTGCACGTGTCCA
AAGCAAGTCACCTCCTGAGAAATCTCAAGGATGCCATCCTGAGTCTAGCTCTGCTCCCTCCAGTCCTGAT
GCTTTGCACACAGACACAGCTGACCCAGTGCTGGGCTGTTCAGAAGAAAGCAAGGTCCGGAGGACGGCCT
GCATGTATGGGGCCAACTGCTACAGGAGGAACCCCCTCCACTTTCAACACTTCAGCCACCCTGGTGACAG
TGACTATGGAGAGGTACATGGCACAGATGAAGGTGTGATTGGTGACAGGCCCGAGTGTCCCTATGGAGCG
TCTTGTTACAGGAAGAACCCCCAGCACAAGATGGAATATAGGCACAGTGCACTTCCAGCCAGAGTTGCTC
TGGATGAAGATGACGATGATGTCGGGCAACCCAGTGACGATGAGGACGAGGAAGACTATGAGCCGACAGA
TGAAGATTCTGATTGGCACCCAGGAAAGGACGATGAGGAGCAGGAAGATGTGGATGAGCTTTTGAAAGAA
GCAAAAAGTTCTTTGCACTTGAAACATTGA

Translation (499 aa):
MPSDFFLQPLDGGPRVPVGPGQTVIGRGPLLGITDKRVSRRHAILEVVDSQLRIKPIHRNPCFYQSSEKS
QHSPMETQVWSQLHPGDSFSLLLDKYAFRVFSAESEVEMECTLRNSQMLDEDDILSEMQKSPVVNLPDKT
TGASQLQGSPEITKTKCPTIDPMSSSGECRAFSEHQPRPTQRKRILPAWMLAESLSDQSLSTPAEGGDKD
VIQRSGKAGTCEDRTPGNTSWHGKKRLSPSGNSKSVSAEQDPGKKCRKADQEGPGVSSENVPESSSSNIV
KDPDVDIVKTNKQKDGILIEELGEVSKHKAATKPTTNEEGESCARVQSKSPPEKSQGCHPESSSAPSSPD
ALHTDTADPVLGCSEESKVRRTACMYGANCYRRNPLHFQHFSHPGDSDYGEVHGTDEGVIGDRPECPYGA
SCYRKNPQHKMEYRHSALPARVALDEDDDDVGQPSDDEDEEDYEPTDEDSDWHPGKDDEEQEDVDELLKE
AKSSLHLKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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