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Report for CCDS26602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26602.1 Public Mus musculus 13 Spata31 23 108 98 CCDS HistoryNCBI Gene:78124Re-query CCDS DB by CCDS ID:26602.1Re-query CCDS DB by GeneID:78124See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070216.8 ENSMUSP00000097025.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070216.8Link to Ensembl Protein Viewer:ENSMUSP00000097025.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000070216Re-query CCDS DB by Protein ID:ENSMUSP00000097025
Original member Current member NCBI NM_030047.2 NP_084323.2 Accepted alive Link to Nucleotide Sequence:NM_030047.2Link to Protein Sequence:NP_084323.2Re-query CCDS DB by Nucleotide ID:NM_030047Re-query CCDS DB by Protein ID:NP_084323Link to BLAST:NP_084323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084323.2 1014 E9QAF0 1014 100% 0 0

Chromosomal Locations for CCDS 26602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64917483 64917665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64919709 64919781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64920296 64923084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3045 nt):
ATGGAGAGCCTTCCCTCTCTTCTGGAAAGCATTTACACCACATGGCTGAGCCTCAGCTCCACTATATGGG
CAATGGACATGATCCTTGCCTTTGTGTGTGGACTGGGGCTCTACCACCTGTTACTTCCTTTTCTTGAGAG
TCATCTGTCTTCACCTCCATCAAATATAAAGTTCACCAGGAAGCCTCAGATACAGATGACCTGGCAGAGC
CAGTTCAAGAAAAAGTTTAGGAATCATTGTAGGAATGATGCAAAAGCTTGGGGAGAATGCCTGAAAAAGC
TGAAAGAAAAAGAAAAGGATAAATTATTTCTAGAAGAAATGAGCCCAGGACACCATTTGAACTCTTTAGG
GAATATATTTAACTCATCAAGTGCTAAACAAGACAGCACTACCCTGTCACCCTTTTGGAACCTGAAAGAA
AAATCAGAAGAGCAGGTGGCCACTCAGAAACTATCTTATCCCAAGATCTCAGAAGACCATTTTCAACAGA
AATGTGACCAGCTTTTCTGGGGTCTCCCTTCTCTCCACAGTGAGTCTCTGGTAGCTGCCGCCTGGATCCC
TCAGACAACGTCAACTCTCCCTTCTCCCTTTTTCTTATTCAATGTCATCTCAAGTGTTTATCCAATTCAA
CTGCAGGATAAAATGTCACCAATGCTTCCCCATACACATCCTCTGTCCTATCTGGACCTCCAATCTCCAC
ACTTAATTCTGTCTCCACTTGAATTCCAGACCCCAGCTTTGAATCTCCCAGTCCTACTACCCTCTTCTCT
ACCCTATAATAGTGATTTTGGTACATCTTATTCTCAATCACAAAGTAAGCCACAATACCTCCCAACTGAA
ATAAAATACAATAAAAAACCCTCACTGGCAAAACAAATAGAAAATAGATCAACTTTACCCTTGATGGTCC
AGAAACCTCAAGAAGCCTATGACATCTTGGCCCCCAACCCTTCCCAAGACTGGGTAGTCTCCATCCTTCC
TGATAATTTTCCCATCTGCCGTGAGCTCCGGGAGAAACTGGAGCAACACATTCAAAAGTGGCTCATTCAA
CACCAATGGAATTTTCCCCATAAGATCCAAGTGTCTGAGAAAATGAAGGAGCTTCAGAACACAGTAATAG
GAAATTGTCAAACCAGAGACAAGCCTGGCACCTTACAAGCCCTTGGTGAACACAGCAATGAGGGCCAGAA
GAGAAAATTCCAGCTAGAAAAGGAATCTGGCAAGAATCTGGGACCTATTCTAGGAAAGATCTCAAAAGAT
CCAATCAGGGGCTTGGAAAAAACTACAGCAATCAAAGATTTAGAAAACAACTTGAAAGCTCATTTGGGTA
CAAAGTCAGGGCAGATAGATCAAGGTCTGACCCCTCTAAGTATGCGACAATCCTGGCTTGCTGTGGATGA
TAGTTTTTACGAGATGGAAAACAATTTAACATCCTTAAAGAGTTCAGCAAAGTCCATGTGCTCTTCAGAG
AAGCTTGCCTTTCTCAAACCAGAAACTCGACAGGCTCTGGAGGCACATATTGTAAGGTTTTGGGCAAAGC
ACAGGTGGAGTCTACCCCTTAAGATACTCAAGCCCGTAAAACTCTTTCAGTTAAGTATTGAGTCCTTGCC
TGTTGTACTCTGTGCCCAGACCTCCTCAACCACTTCTGTACATAGGACCAGATCAGCAGCTGAAGTAGTC
AGATTCCTAGGAAAACCATGCTTGAGACAGATGATAATTGAGGATTCTTCTCCATCACCACAGAATCTTC
TCCTTGTCTCATCTCCTTCCTGTAAGAGGGCCAGGAGAAGGCTTCCCTTTGGTGTTGACCATGAGCCTTC
TACAGCCCTGCCAACCAAACCAGAGTGTGGGCATATTTCAGAAGATCTCACTTATAATTTCATGAACACA
ACCTCTCAGACTAGGACTATCTTCAAGAAAGAGATAGAGACTCGAGAAGTCGTTTTACTGCCTAGAAGGA
CGAGTGACCAAAATTTGGAGGCATACAAACATCAGGAAAAAGTTGTTAGTGAGTTTCCACATAATGTGGA
GACAGAATTAGCAGGCCAGCCACAAATCTATACCACTACTGTGCTCCCTCCAAAACGTTCCAGGAGCATG
CCTCTTCCTGTAGACACTTTGACTTCACATGTATTAGGTGACATTGTGGTGGCAGACATGGACAATAGCC
TGGTGCAGCAGAGACCCAGTACTCCAAAGCATCTAGTCTCACAGAAGAGCCAAATCAAGATGTTGGCCCC
TACTTATCAAAGTGAGGGCACTAAGAGACAGAGTGAAATAAAGTATGAAGACAGACCTAAGCTCACCCCA
GTCACAGAGAAAAAAGCCAACTTTGGCAGCCAATACTACCAGACCCTTCCAAAAATCGCACAAGTGCTTC
CAGGAAGGCCCCCCCAAAGACATTTAGGTCGCTTTCTACAGTGGATTCATCCTAAGAAAACAATCAAAGG
GCATGAATTTCATCCCCTAAAAGGTAATCCTACAGCAGCCATTGTCCAGAACCAACGAAGGCAAGTGAGA
AAAATACCATATATGGACAACAATGTGACTGAGGCCCAGGAACTTATGACAACTGTTGGACAGATGTTAG
AAAAGAAAATGATGCTGCAACATCAACCCTATGCTTCAAAATTCAACCAGCACAGGGAAGTTCCTCCAGC
CCCCATGTCTCGGTTTTCCCATGGCCACATGCCAGTCTCCTACTTACAGCAAAGGAGAGCACCCAGTTAC
CCTGGCAGTTGCTCATGTCAGAGGTGTTCTGTACAGAACAGGCACATCAGAAACCAACTGCCTCAGAGAA
GTGTACGCTTTAGCAAGAAACCACAGAACCCACGGAACCCCAGCCACAAGAAACCACAGAACCCACGGAA
CCCCAGCCGCTTGTCCCGTAACGCAGCTTTGAACCTAGTGAATTCTCAGAACAGAACAATAGTGCCAGGA
AATTCAAATCACCATCTTTATTGTCCTAGGCACTGTGCCCTCCAGAGAGATGTCTGTAGAGAACTAGGAC
ATTCCTCTGTAGTTTTTCCTAATAGGAAAACATAA

Translation (1014 aa):
MESLPSLLESIYTTWLSLSSTIWAMDMILAFVCGLGLYHLLLPFLESHLSSPPSNIKFTRKPQIQMTWQS
QFKKKFRNHCRNDAKAWGECLKKLKEKEKDKLFLEEMSPGHHLNSLGNIFNSSSAKQDSTTLSPFWNLKE
KSEEQVATQKLSYPKISEDHFQQKCDQLFWGLPSLHSESLVAAAWIPQTTSTLPSPFFLFNVISSVYPIQ
LQDKMSPMLPHTHPLSYLDLQSPHLILSPLEFQTPALNLPVLLPSSLPYNSDFGTSYSQSQSKPQYLPTE
IKYNKKPSLAKQIENRSTLPLMVQKPQEAYDILAPNPSQDWVVSILPDNFPICRELREKLEQHIQKWLIQ
HQWNFPHKIQVSEKMKELQNTVIGNCQTRDKPGTLQALGEHSNEGQKRKFQLEKESGKNLGPILGKISKD
PIRGLEKTTAIKDLENNLKAHLGTKSGQIDQGLTPLSMRQSWLAVDDSFYEMENNLTSLKSSAKSMCSSE
KLAFLKPETRQALEAHIVRFWAKHRWSLPLKILKPVKLFQLSIESLPVVLCAQTSSTTSVHRTRSAAEVV
RFLGKPCLRQMIIEDSSPSPQNLLLVSSPSCKRARRRLPFGVDHEPSTALPTKPECGHISEDLTYNFMNT
TSQTRTIFKKEIETREVVLLPRRTSDQNLEAYKHQEKVVSEFPHNVETELAGQPQIYTTTVLPPKRSRSM
PLPVDTLTSHVLGDIVVADMDNSLVQQRPSTPKHLVSQKSQIKMLAPTYQSEGTKRQSEIKYEDRPKLTP
VTEKKANFGSQYYQTLPKIAQVLPGRPPQRHLGRFLQWIHPKKTIKGHEFHPLKGNPTAAIVQNQRRQVR
KIPYMDNNVTEAQELMTTVGQMLEKKMMLQHQPYASKFNQHREVPPAPMSRFSHGHMPVSYLQQRRAPSY
PGSCSCQRCSVQNRHIRNQLPQRSVRFSKKPQNPRNPSHKKPQNPRNPSRLSRNAALNLVNSQNRTIVPG
NSNHHLYCPRHCALQRDVCRELGHSSVVFPNRKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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