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Report for CCDS25623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25623.1 Public Mus musculus 11 Tmem104 23 108 98 CCDS HistoryNCBI Gene:320534Re-query CCDS DB by CCDS ID:25623.1Re-query CCDS DB by GeneID:320534See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061450.6 ENSMUSP00000056805.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061450.6Link to Ensembl Protein Viewer:ENSMUSP00000056805.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061450Re-query CCDS DB by Protein ID:ENSMUSP00000056805
Original member Current member NCBI NM_001033393.2 NP_001028565.1 Accepted alive Link to Nucleotide Sequence:NM_001033393.2Link to Protein Sequence:NP_001028565.1Re-query CCDS DB by Nucleotide ID:NM_001033393Re-query CCDS DB by Protein ID:NP_001028565Link to BLAST:NP_001028565.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028565.1 496 Q3TB48 496 100% 0 0

Chromosomal Locations for CCDS 25623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115188278 115188322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115197236 115197357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115200820 115200901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115201316 115201412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115202132 115202212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115205062 115205161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115205475 115205583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115228421 115228514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115243370 115244130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGCAGGCGAGATCACAGAGACCGGAGAGCTCTATTCTCCTTATGTCGGGCTGGTGTACATGTTTAACC
TCATCGTGGGCACAGGTGCGCTCACCATGCCCAAGGCCTTTGCCACCGCCGGGTGGCTCGTCAGCCTCGT
TCTGCTGGTATTCGTAGGCTTCATGAGCTTTGTGACAACCACCTTTGCGATGGAAGCCATGGCTGCAGCC
AATGCCCAGCTCCGCTGGAAGAGGATGGAGACCCACAAGGAAGAGGATGACGAAGACTCGTCCACAGCCT
CAGACAGTGACCTCCTCAGCCAAGACAACTACGAGAGGGCAGAGAAACGCCCCATCCTGTCTGTGCAGAG
ACGCTCATCTGCCAACCTTTTTGAAATCACAGACCGGGTGGAAATGGGACAGATGGCTTCCATGTTCTTC
AATAAAGTGGGGGTCAACTTGTTCTATTTCTGCATCATTACTTACCTGTATGGAGACCTCGCCATCTACG
CGGCCGCGGTGCCCGTGTCCCTCATGCAGGTGACCTGCAGCGTCTCTGGAAATGACTCTTGCGGCGTGGA
TACAGACGCCAGATACAACGACACTGATCTGTGCTGGGGCCCCCTGCGCCGGGTGGATGTCTACCGAATC
TATCTGGCCATCTTCACCGTCCTTCTTGGCCCGTTCACCTTCTTTGATGTCCAGAAGACTAAGTACCTGC
AGATCTTGACCTCTATGATGAGATGGATCGCCTTTGCCATCATGATTGTGCTGGCCCTGGTGCGCATCGG
GAAAGGACAAGGAGAGGGGCACCCGCCCCTAGCCAACTTCTTGGGGGTCCAGAACCTGTTTGGGGTGTGT
GTCTACTCGTTCATGTGCCAACACTCCCTGCCGTCCCTCATCACTCCCATCTCCTCCAAGCGCCACATCA
CGCGGCTGCTGTTCCTGGACTACGCACTGATCCTGGCCTTCTACGGCCTCCTCTCCTTCACGGCTATCTT
CTGCTTCCGTGGGGACAGCCTCATGGACATGTACACCCTCAACTTCGCGAGGTGTGACGTCGTGGGCCTT
GCTGCAGTCCGGTTCTTTCTGGGCCTCTTCCCTGTGTTCACCATCAGCACCAACTTCCCCATCATCGCGG
TGACCCTGCGCAACAACTGGAAGACGCTCTTCCACCGTGAAGGTGGCACCTACCCATGGGTGGTAGACCG
AGTGGTGTTCCCCACGATCACCCTGGTGCCTCCCATTCTGGTGGCCTTCTGCACCCATGACCTGGAGTCC
CTGGTGGCCATTACAGGAGCCTATGCGGGCACCGGCATCCAGTACGTCATCCCTGCCTTCCTGGTGTACC
TCTGCCGCAAGGACACCCAGCTGACCTTTGGCTATGGAACTGTCAACAAGCATAGGTCCCCGTTCCGCCA
CACCTTCTGGGTGGCCTTTGTGCTGCTGTGGGCTTTCTCCTGCTTCTTCTTTGTCACGGCCTACATCGTC
CTCAAGGAGACCCAGCTCTGA

Translation (496 aa):
MAGEITETGELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFVGFMSFVTTTFAMEAMAAA
NAQLRWKRMETHKEEDDEDSSTASDSDLLSQDNYERAEKRPILSVQRRSSANLFEITDRVEMGQMASMFF
NKVGVNLFYFCIITYLYGDLAIYAAAVPVSLMQVTCSVSGNDSCGVDTDARYNDTDLCWGPLRRVDVYRI
YLAIFTVLLGPFTFFDVQKTKYLQILTSMMRWIAFAIMIVLALVRIGKGQGEGHPPLANFLGVQNLFGVC
VYSFMCQHSLPSLITPISSKRHITRLLFLDYALILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGL
AAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPILVAFCTHDLES
LVAITGAYAGTGIQYVIPAFLVYLCRKDTQLTFGYGTVNKHRSPFRHTFWVAFVLLWAFSCFFFVTAYIV
LKETQL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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