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Report for CCDS48815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48815.1 Public Mus musculus 11 Tmem11 23 108 98 CCDS HistoryNCBI Gene:216821Re-query CCDS DB by CCDS ID:48815.1Re-query CCDS DB by GeneID:216821See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168218.7 ENSMUSP00000128654.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168218.7Link to Ensembl Protein Viewer:ENSMUSP00000128654.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168218Re-query CCDS DB by Protein ID:ENSMUSP00000128654
Original member Current member NCBI NM_001168507.1 NP_001161979.1 Accepted alive Link to Nucleotide Sequence:NM_001168507.1Link to Protein Sequence:NP_001161979.1Re-query CCDS DB by Nucleotide ID:NM_001168507Re-query CCDS DB by Protein ID:NP_001161979Link to BLAST:NP_001161979.1

Chromosomal Locations for CCDS 48815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60864832 60865348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60875760 60875773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGAGTGTTGGAATGGTCAGCCTCTCAGCTACAGACTGCTACATTGTGCACGAAATCTACAGTGGGGAGA
ACGCCCAGGACCAGTTTGAGTATGAGCTGGAGCAGGCGCTGGAAGCCCAGTACAAGTACATTGTGATAGA
GCCCACCCGAATTGGAGACGAGACAGCACGCTGGATCACCGTAGGCAATTGCCTGCACAAGACGGCCGTG
TTGGCAGGTACTGCCTGCCTCTTCACCCCATTGGCACTGCCCCTGGATTACTCCCACTACATCTCCCTGC
CCGCTGGTGTGCTGAGCCTGGCCTGCTGTACCCTCTATGGGATCTCCTGGCAGTTTGACCCTTGCTGCAA
GTACCAGGTGGAGTATGATGCCTATAAACTGTCCCGCCTGCCTCTGCACACGCTCACCTCCTCCACACCA
GTGGTGCTGGTTCGGAAGGACGACCTGCACAGAAAGAGACTGCACAACACAATAGCCCTGGCTGCCCTGG
TGTACTGTGTAAAGAAGGTTTATGAGCTCTACGCCGTATGA

Translation (176 aa):
MSVGMVSLSATDCYIVHEIYSGENAQDQFEYELEQALEAQYKYIVIEPTRIGDETARWITVGNCLHKTAV
LAGTACLFTPLALPLDYSHYISLPAGVLSLACCTLYGISWQFDPCCKYQVEYDAYKLSRLPLHTLTSSTP
VVLVRKDDLHRKRLHNTIALAALVYCVKKVYELYAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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