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Report for CCDS16956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16956.1 Public Mus musculus 2 Eif6 23 108 98 CCDS HistoryNCBI Gene:16418Re-query CCDS DB by CCDS ID:16956.1Re-query CCDS DB by GeneID:16418See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029142.14 ENSMUSP00000029142.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029142.14Link to Ensembl Protein Viewer:ENSMUSP00000029142.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029142Re-query CCDS DB by Protein ID:ENSMUSP00000029142
Original member Current member NCBI NM_010579.2 NP_034709.1 Accepted alive Link to Nucleotide Sequence:NM_010579.2Link to Protein Sequence:NP_034709.1Re-query CCDS DB by Nucleotide ID:NM_010579Re-query CCDS DB by Protein ID:NP_034709Link to BLAST:NP_034709.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034709.1 245 O55135 245 100% 0 0

Chromosomal Locations for CCDS 16956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155820102 155820111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155822837 155823018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155823192 155823368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155823865 155824040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155826125 155826210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155826327 155826433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCGGTCAGAGCGTCGTTCGAGAACAACTGTGAGGTCGGTTGTTTTGCCAAACTCACAAACGCCTACT
GCCTGGTGGCCATCGGAGGCTCAGAGAACTTCTATAGTGTGTTCGAGGGTGAGCTCTCCGATGCCATTCC
CGTGGTGCACGCATCCATCGCCGGCTGCCGAATCATCGGGCGCATGTGTGTGGGGAACAGGCATGGGCTC
CTGGTACCCAACAACACCACCGACCAGGAGCTGCAGCACATCCGCAACAGCCTGCCTGACTCCGTGCAGA
TACGGCGGGTGGAGGAGCGGCTCTCGGCCCTTGGCAATGTCACCACCTGCAATGACTATGTGGCCTTGGT
CCACCCAGACTTGGACAGGGAGACAGAAGAGATCCTGGCTGATGTCCTCAAGGTGGAAGTCTTCAGACAG
ACAGTTGCTGACCAGGTGCTAGTAGGAAGCTACTGTGTCTTCAGTAATCAGGGGGGGCTGGTGCACCCTA
AAACTTCTATCGAGGACCAGGATGAGTTGTCCTCCCTTCTTCAGGTCCCCCTTGTGGCAGGCACTGTGAA
CCGAGGGAGTGAGGTGATTGCTGCTGGGATGGTGGTGAACGATTGGTGTGCTTTCTGTGGTCTGGACACG
ACCAGCACGGAGCTGTCAGTGGTGGAGAGCGTCTTCAAGCTGAATGAAGCCAAGCCAAGTACCATTGCCA
CCAGCATGCGGGATTCCCTCATTGACAGCCTCACATGA

Translation (245 aa):
MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGL
LVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQ
TVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDT
TSTELSVVESVFKLNEAKPSTIATSMRDSLIDSLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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