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Report for CCDS53174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53174.1 Public Mus musculus X 2010106E10Rik 23 108 98 CCDS HistoryNCBI Gene:67715Re-query CCDS DB by CCDS ID:53174.1Re-query CCDS DB by GeneID:67715See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113412.2 ENSMUSP00000109039.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113412.2Link to Ensembl Protein Viewer:ENSMUSP00000109039.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113412Re-query CCDS DB by Protein ID:ENSMUSP00000109039
Original member Current member NCBI NM_001168590.1 NP_001162062.1 Accepted alive Link to Nucleotide Sequence:NM_001168590.1Link to Protein Sequence:NP_001162062.1Re-query CCDS DB by Nucleotide ID:NM_001168590Re-query CCDS DB by Protein ID:NP_001162062Link to BLAST:NP_001162062.1

Chromosomal Locations for CCDS 53174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112495347 112495419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112497873 112497978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112512392 112512583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112515189 112515312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112556250 112556332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112556969 112557107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112557847 112557969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGGCAGATTGCACATTTATGCTGACTCAAATGCTGTTCATCTCCTGGTTTTTGATGGCACATTGCTCAC
AACCCAACTGTACATCTGTGAAAGACTTTAACAATTGTCTAGGAAACACAACAGGTTTCTGCCCAGAGTC
TATTGTTTGTGCATGCAAGGATGGCAAGCCTTTCTGCAAATGTCCAAATTTCAGAGGCCAATGGGGAGAC
TACTGGTACATGGGGGAGAAATGTGATCAACTCTGGAACACTCTGGACCTGGTTTTAGTAGCAACATTGC
CTGGAATAGCACTGGCCATAATCGTTGGTGTGGCAATCCAGATTATCCATTACTGTAAAGGGAAGTCAAA
GAAGAATGGAAATCATCACAGAGTGGAGAAGAGTATGTCAGAACTTCGACCTCAACATAATTCTGCATAT
GGTTTGGGTACTGATAGGAATCTTCCTCAACCTAATCAAAGAGAGGTAAACACTGAAACTCATTTGTCAA
ATAAAAATCCATGGAGCTTATCAAACCCAGAAGCTTTTTCTAGAACTTCTTTTTCTCCATCATCACAATT
ATCCAGAACAAATTCCAACTTTATTGCTCAAGAACACAAAGAAGACCATCCTTACAACTATCCATATCTT
AAGTGGAATGCCTCTCCAGGACCAAGTAATCCCGCAGTAAACTATGGAAACAGTCATTTGTCAGCCACAT
ATGCAAAGCCAAACTTTGATTTTTCCACATCCGGGGTCCCACGAGCAGCATATCCTCCAAAAGAAAAGAA
ATACTCGGTTTATGAAGAGTCAGAAATCACTTACAAAATTGGTCGTGCAAACATGATACCCAACTATTAA

Translation (279 aa):
MADCTFMLTQMLFISWFLMAHCSQPNCTSVKDFNNCLGNTTGFCPESIVCACKDGKPFCKCPNFRGQWGD
YWYMGEKCDQLWNTLDLVLVATLPGIALAIIVGVAIQIIHYCKGKSKKNGNHHRVEKSMSELRPQHNSAY
GLGTDRNLPQPNQREVNTETHLSNKNPWSLSNPEAFSRTSFSPSSQLSRTNSNFIAQEHKEDHPYNYPYL
KWNASPGPSNPAVNYGNSHLSATYAKPNFDFSTSGVPRAAYPPKEKKYSVYEESEITYKIGRANMIPNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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