NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27756.1 Public Mus musculus 15 Syt10 23 108 98 CCDS HistoryNCBI Gene:54526Re-query CCDS DB by CCDS ID:27756.1Re-query CCDS DB by GeneID:54526See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27756.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029441.3 ENSMUSP00000029441.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029441.3Link to Ensembl Protein Viewer:ENSMUSP00000029441.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029441Re-query CCDS DB by Protein ID:ENSMUSP00000029441
Original member Current member NCBI NM_018803.2 NP_061273.1 Accepted alive Link to Nucleotide Sequence:NM_018803.2Link to Protein Sequence:NP_061273.1Re-query CCDS DB by Nucleotide ID:NM_018803Re-query CCDS DB by Protein ID:NP_061273Link to BLAST:NP_061273.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061273.1 523 Q9R0N4 523 100% 0 0

Chromosomal Locations for CCDS 27756.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89782575 89782646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89787031 89787160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89790772 89790943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89792584 89792704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89814063 89814630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89826820 89827177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89841619 89841769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAGTTTCCGCAAGGAGGACGGTGTGAGCAGCCTGTGCCAGAAGGCGCTGCACATCATCACCGAGCTGT
GCTTCGCGGGTCAGGTGGAGTGGGACAAGTGTTCGGGCATCTTTCCAGCCGATAGGAGCGGCCAGGGAGG
AGGTGGCACAGATATTTCAGTCAGCCTGTTAGCGGTTGTTGTAAGCTTCTGTGGCCTGGCCTTGCTGGTT
GTCTCCCTTTTTGTCTTCTGGAAGTTGTGCTGGCCATGCTGGAAGAGCAAGCTTGTGGCCCCCAACCTCA
GTGTCCTTCCACAAAGCATCTCAAGTGCTCCAACTGAAGTTTTTGAGACTGAAGAGAAAAAAGAAGTGGA
AGAAAATGAAAAGCCAGCACCCAAAGCCATTGAGCCTGCAATAAAAATCAGCCACACATCCCCCGACATC
CCAGCAGAAGTGCAGACAGCTTTAAAGGAGCACTTGATTAAACATGCTCGAGTGCAAAGGCAAACAACCG
AGCCTACGTCTTCATCCCGCCACAACTCCTTCAGGAGACACCTACCAAGGCAAATGAATGTCTCCAGCGT
CGACTTTAGCGTGGGCACTGAACCCATCTTACAAAGAGGAGAAACGAGAACGAGCATCGGGAGGATAAAA
CCAGAACTCTACAAGCAGAAATCGGTTGACTCCGAGGGCAACAGAAAAGACGACGTCAAGACCTGTGGGA
AACTTAACTTTGCGCTCCAGTATGATTATGAAAATGAACTCCTAGTTGTTAAAATTATCAAAGCTTTAGA
TCTCCCAGCTAAAGATTTCACAGGAACTTCTGATCCTTATGTGAAGATCTATCTTCTTCCGGATAGGAAG
AAGAAATTTCAGACCCGCGTGCACCGGAAGACTTTAAACCCTCTGTTTGATGAGCTATTTCAGTTTCCGG
TGGTTTACGATCAGCTAAGCAACCGCAAACTACACTTTAGTATATATGATTTTGACAGATTTTCCAGACA
CGACATGATTGGGGAAGTGATTCTTGATAATTTATTTGAAGTCTCTGATCTCTCCAGGGAAGCCACAGTA
TGGAAAGATATCCACTGTGCTACCACAGAAAGCATAGACCTGGGGGAAATCATGTTCTCCCTTTGCTATT
TGCCAACTGCTGGCCGTATGACCTTGACAGTGATCAAGTGCAGAAATCTGAAGGCAATGGACATCACTGG
GTCATCAGATCCTTATGTCAAAGTGTCTCTGATGTGTGAGGGCCGAAGACTTAAAAAACGGAAAACAACT
ACAAAGAAAAATACTCTCAATCCCGTGTACAACGAAGCCATTATCTTCGATATCCCTCCAGAGAATGTGG
ACCAGGTCAGCCTGTGCATTGCAGTCATGGATTACGACAGGGTGGGGCACAATGAGGTCATAGGCGTGTG
TCGAACTGGACTAGACGCTGAGGGTCTTGGGAGAGACCATTGGAACGAGATGCTGGCCTATCACCGAAAG
CCAATCACACACTGGCACCCCTTGCTGGAGTTACCTGGCCGGGCCACCAGCTTTGATAGTCAAGGGTCCT
GTTCTTCTCCCAGGCCACCGTCCACACCATAA

Translation (523 aa):
MSFRKEDGVSSLCQKALHIITELCFAGQVEWDKCSGIFPADRSGQGGGGTDISVSLLAVVVSFCGLALLV
VSLFVFWKLCWPCWKSKLVAPNLSVLPQSISSAPTEVFETEEKKEVEENEKPAPKAIEPAIKISHTSPDI
PAEVQTALKEHLIKHARVQRQTTEPTSSSRHNSFRRHLPRQMNVSSVDFSVGTEPILQRGETRTSIGRIK
PELYKQKSVDSEGNRKDDVKTCGKLNFALQYDYENELLVVKIIKALDLPAKDFTGTSDPYVKIYLLPDRK
KKFQTRVHRKTLNPLFDELFQFPVVYDQLSNRKLHFSIYDFDRFSRHDMIGEVILDNLFEVSDLSREATV
WKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTT
TKKNTLNPVYNEAIIFDIPPENVDQVSLCIAVMDYDRVGHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRK
PITHWHPLLELPGRATSFDSQGSCSSPRPPSTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH