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Report for CCDS42405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42405.1 Public Homo sapiens 18 CLUL1 24 110 108 CCDS HistoryNCBI Gene:27098Re-query CCDS DB by CCDS ID:42405.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 42405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338387.11 ENSP00000341128.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338387.11Link to Ensembl Protein Viewer:ENSP00000341128.6Re-query CCDS DB by Nucleotide ID:ENST00000338387Re-query CCDS DB by Protein ID:ENSP00000341128
Original member Current member EBI ENST00000400606.6 ENSP00000383449.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400606.6Link to Ensembl Protein Viewer:ENSP00000383449.2Re-query CCDS DB by Nucleotide ID:ENST00000400606Re-query CCDS DB by Protein ID:ENSP00000383449
Original member Current member EBI ENST00000540035.5 ENSP00000441726.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540035.5Link to Ensembl Protein Viewer:ENSP00000441726.2Re-query CCDS DB by Nucleotide ID:ENST00000540035Re-query CCDS DB by Protein ID:ENSP00000441726
Original member Current member EBI ENST00000579494.1 ENSP00000464642.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000579494.1Link to Ensembl Protein Viewer:ENSP00000464642.1Re-query CCDS DB by Nucleotide ID:ENST00000579494Re-query CCDS DB by Protein ID:ENSP00000464642
Original member Current member EBI ENST00000692774.1 ENSP00000510271.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000692774.1Link to Ensembl Protein Viewer:ENSP00000510271.1Re-query CCDS DB by Nucleotide ID:ENST00000692774Re-query CCDS DB by Protein ID:ENSP00000510271
Original member Current member NCBI NM_001289036.3 NP_001275965.2 Accepted alive Link to Nucleotide Sequence:NM_001289036.3Link to Protein Sequence:NP_001275965.2Re-query CCDS DB by Nucleotide ID:NM_001289036Re-query CCDS DB by Protein ID:NP_001275965Link to BLAST:NP_001275965.2
Original member Current member NCBI NM_001318522.2 NP_001305451.1 Accepted alive Link to Nucleotide Sequence:NM_001318522.2Link to Protein Sequence:NP_001305451.1Re-query CCDS DB by Nucleotide ID:NM_001318522Re-query CCDS DB by Protein ID:NP_001305451Link to BLAST:NP_001305451.1
Original member Current member NCBI NM_001375492.2 NP_001362421.1 Accepted alive Link to Nucleotide Sequence:NM_001375492.2Link to Protein Sequence:NP_001362421.1Re-query CCDS DB by Nucleotide ID:NM_001375492Re-query CCDS DB by Protein ID:NP_001362421Link to BLAST:NP_001362421.1
Original member Current member NCBI NM_001393344.1 NP_001380273.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001393344.1Link to Protein Sequence:NP_001380273.1Re-query CCDS DB by Nucleotide ID:NM_001393344Re-query CCDS DB by Protein ID:NP_001380273Link to BLAST:NP_001380273.1
Original member Current member NCBI NM_001393345.1 NP_001380274.1 Accepted alive Link to Nucleotide Sequence:NM_001393345.1Link to Protein Sequence:NP_001380274.1Re-query CCDS DB by Nucleotide ID:NM_001393345Re-query CCDS DB by Protein ID:NP_001380274Link to BLAST:NP_001380274.1
Original member Current member NCBI NM_001393346.1 NP_001380275.1 Accepted alive Link to Nucleotide Sequence:NM_001393346.1Link to Protein Sequence:NP_001380275.1Re-query CCDS DB by Nucleotide ID:NM_001393346Re-query CCDS DB by Protein ID:NP_001380275Link to BLAST:NP_001380275.1
Original member Current member NCBI NM_001393347.1 NP_001380276.1 Accepted alive Link to Nucleotide Sequence:NM_001393347.1Link to Protein Sequence:NP_001380276.1Re-query CCDS DB by Nucleotide ID:NM_001393347Re-query CCDS DB by Protein ID:NP_001380276Link to BLAST:NP_001380276.1
Original member Current member NCBI NM_001393348.1 NP_001380277.1 Accepted alive Link to Nucleotide Sequence:NM_001393348.1Link to Protein Sequence:NP_001380277.1Re-query CCDS DB by Nucleotide ID:NM_001393348Re-query CCDS DB by Protein ID:NP_001380277Link to BLAST:NP_001380277.1
Original member Current member NCBI NM_014410.6 NP_055225.1 Accepted alive Link to Nucleotide Sequence:NM_014410.6Link to Protein Sequence:NP_055225.1Re-query CCDS DB by Nucleotide ID:NM_014410Re-query CCDS DB by Protein ID:NP_055225Link to BLAST:NP_055225.1
Original member Current member NCBI NM_199167.2 NP_954636.1 Accepted alive Link to Nucleotide Sequence:NM_199167.2Link to Protein Sequence:NP_954636.1Re-query CCDS DB by Nucleotide ID:NM_199167Re-query CCDS DB by Protein ID:NP_954636Link to BLAST:NP_954636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275965.2 466 Q15846 466 100% 0 0
NP_001305451.1 466 Q15846 466 100% 0 0
NP_001362421.1 466 Q15846 466 100% 0 0
NP_001380273.1 466 Q15846 466 100% 0 0
NP_001380274.1 466 Q15846 466 100% 0 0
NP_001380275.1 466 Q15846 466 100% 0 0
NP_001380276.1 466 Q15846 466 100% 0 0
NP_001380277.1 466 Q15846 466 100% 0 0
NP_055225.1 466 Q15846 466 100% 0 0
NP_954636.1 466 Q15846 466 100% 0 0

Chromosomal Locations for CCDS 42405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 618001 618106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 619213 619361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 624865 625032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 627097 627529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 633298 633435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 641327 641541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 644910 645097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 649898 649901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGAAGCCGCCACTCTTGGTGTTTATTGTGTGTCTGCTGTGGTTGAAAGACAGTCACTGCGCACCCACTT
GGAAGGACAAAACTGCTATCAGTGAAAACCTGAAGAGTTTTTCTGAGGTGGGGGAGATAGATGCAGATGA
AGAGGTGAAGAAGGCTTTGACTGGTATTAAGCAAATGAAAATCATGATGGAAAGAAAAGAGAAGGAACAC
ACCAATCTAATGAGCACCCTGAAGAAATGCAGAGAAGAAAAGCAGGAGGCCCTGAAACTTCTGAATGAAG
TTCAAGAACATCTGGAGGAAGAAGAAAGGCTATGCCGGGAGTCTTTGGCAGATTCCTGGGGTGAATGCAG
GTCTTGCCTGGAAAATAACTGCATGAGAATTTATACAACCTGCCAACCTAGCTGGTCCTCTGTGAAAAAT
AAGATTGAACGGTTTTTCAGGAAGATATATCAATTTCTATTTCCTTTCCATGAAGATAATGAAAAAGATC
TCCCCATCAGTGAAAAGCTCATTGAGGAAGATGCACAATTGACCCAAATGGAGGATGTGTTCAGCCAGTT
GACTGTGGATGTGAATTCTCTCTTTAACAGGAGTTTTAACGTCTTCAGACAGATGCAGCAAGAGTTTGAC
CAGACTTTTCAATCACATTTCATATCAGATACAGACCTAACTGAGCCTTACTTTTTTCCAGCTTTCTCTA
AAGAGCCGATGACAAAAGCAGATCTTGAGCAATGTTGGGACATTCCCAACTTCTTCCAGCTGTTTTGTAA
TTTCAGTGTCTCTATTTATGAAAGTGTCAGTGAAACAATTACTAAGATGCTGAAGGCAATAGAAGATTTA
CCAAAACAAGACAAAGCTCCTGACCACGGAGGCCTGATTTCAAAGATGTTACCTGGGCAGGACAGAGGAC
TGTGTGGGGAACTTGACCAGAATTTGTCAAGATGTTTCAAATTTCATGAAAAATGCCAAAAATGTCAGGC
TCACCTATCTGAAGACTGTCCTGATGTACCTGCTCTGCACACAGAATTAGACGAGGCGATCAGGTTGGTC
AATGTATCCAATCAGCAGTATGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACACCGCCTATC
TGGTGGAGAAGATGAGAGGGCAATTTGGCTGGGTGTCTGAACTGGCAAACCAGGCCCCAGAAACAGAGAT
CATCTTTAATTCAATACAGGTAGTTCCAAGGATTCATGAAGGAAATATTTCCAAACAAGATGAAACAATG
ATGACAGACTTAAGCATTCTGCCTTCCTCTAATTTCACACTCAAGATCCCTCTTGAAGAAAGTGCTGAGA
GTTCTAACTTCATTGGCTACGTAGTGGCAAAAGCTCTACAGCATTTTAAGGAACATTTTAAAACCTGGTA
A

Translation (466 aa):
MKPPLLVFIVCLLWLKDSHCAPTWKDKTAISENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKEKEH
TNLMSTLKKCREEKQEALKLLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYTTCQPSWSSVKN
KIERFFRKIYQFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDVFSQLTVDVNSLFNRSFNVFRQMQQEFD
QTFQSHFISDTDLTEPYFFPAFSKEPMTKADLEQCWDIPNFFQLFCNFSVSIYESVSETITKMLKAIEDL
PKQDKAPDHGGLISKMLPGQDRGLCGELDQNLSRCFKFHEKCQKCQAHLSEDCPDVPALHTELDEAIRLV
NVSNQQYGQILQMTRKHLEDTAYLVEKMRGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQDETM
MTDLSILPSSNFTLKIPLEESAESSNFIGYVVAKALQHFKEHFKTW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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