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Report for CCDS41542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41542.1 Public Homo sapiens 10 GHITM 24 110 108 CCDS HistoryNCBI Gene:27069Re-query CCDS DB by CCDS ID:41542.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372134.6 ENSP00000361207.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372134.6Link to Ensembl Protein Viewer:ENSP00000361207.3Re-query CCDS DB by Nucleotide ID:ENST00000372134Re-query CCDS DB by Protein ID:ENSP00000361207
Original member Current member EBI ENST00000690067.1 ENSP00000508495.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690067.1Link to Ensembl Protein Viewer:ENSP00000508495.1Re-query CCDS DB by Nucleotide ID:ENST00000690067Re-query CCDS DB by Protein ID:ENSP00000508495
Original member Current member EBI ENST00000690283.1 ENSP00000508559.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690283.1Link to Ensembl Protein Viewer:ENSP00000508559.1Re-query CCDS DB by Nucleotide ID:ENST00000690283Re-query CCDS DB by Protein ID:ENSP00000508559
Original member Current member EBI ENST00000686247.1 ENSP00000509112.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686247.1Link to Ensembl Protein Viewer:ENSP00000509112.1Re-query CCDS DB by Nucleotide ID:ENST00000686247Re-query CCDS DB by Protein ID:ENSP00000509112
Original member Current member EBI ENST00000688802.1 ENSP00000509674.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688802.1Link to Ensembl Protein Viewer:ENSP00000509674.1Re-query CCDS DB by Nucleotide ID:ENST00000688802Re-query CCDS DB by Protein ID:ENSP00000509674
Original member Current member EBI ENST00000690920.1 ENSP00000509697.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690920.1Link to Ensembl Protein Viewer:ENSP00000509697.1Re-query CCDS DB by Nucleotide ID:ENST00000690920Re-query CCDS DB by Protein ID:ENSP00000509697
Original member Current member EBI ENST00000691609.1 ENSP00000509708.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691609.1Link to Ensembl Protein Viewer:ENSP00000509708.1Re-query CCDS DB by Nucleotide ID:ENST00000691609Re-query CCDS DB by Protein ID:ENSP00000509708
Original member Current member EBI ENST00000691155.1 ENSP00000510216.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691155.1Link to Ensembl Protein Viewer:ENSP00000510216.1Re-query CCDS DB by Nucleotide ID:ENST00000691155Re-query CCDS DB by Protein ID:ENSP00000510216
Original member Current member EBI ENST00000686583.1 ENSP00000510236.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686583.1Link to Ensembl Protein Viewer:ENSP00000510236.1Re-query CCDS DB by Nucleotide ID:ENST00000686583Re-query CCDS DB by Protein ID:ENSP00000510236
Original member Current member EBI ENST00000687085.1 ENSP00000510576.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687085.1Link to Ensembl Protein Viewer:ENSP00000510576.1Re-query CCDS DB by Nucleotide ID:ENST00000687085Re-query CCDS DB by Protein ID:ENSP00000510576
Original member Current member NCBI NM_014394.3 NP_055209.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014394.3Link to Protein Sequence:NP_055209.2Re-query CCDS DB by Nucleotide ID:NM_014394Re-query CCDS DB by Protein ID:NP_055209Link to BLAST:NP_055209.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055209.2 345 Q9H3K2 345 100% 0 0

Chromosomal Locations for CCDS 41542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84141501 84141629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84142655 84142754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84143995 84144106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84144875 84145016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84148730 84148838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84150055 84150243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84150709 84150880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84152264 84152348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTTGGCTGCAAGGCTGGTGTGTCTCCGGACACTACCTTCTAGGGTTTTCCACCCAGCTTTCACCAAGG
CCTCCCCTGTTGTGAAGAATTCCATCACGAAGAATCAATGGCTGTTAACACCTAGCAGGGAATATGCCAC
CAAAACAAGAATTGGGATCCGGCGTGGGAGAACTGGCCAAGAACTCAAAGAGGCAGCATTGGAACCATCG
ATGGAAAAAATATTTAAAATTGATCAGATGGGAAGATGGTTTGTTGCTGGAGGGGCTGCTGTTGGTCTTG
GAGCATTGTGCTACTATGGCTTGGGACTGTCTAATGAGATTGGAGCTATTGAAAAGGCTGTAATTTGGCC
TCAGTATGTCAAGGATAGAATTCATTCCACCTATATGTACTTAGCAGGGAGTATTGGTTTAACAGCTTTG
TCTGCCATAGCAATCAGCAGAACGCCTGTTCTCATGAACTTCATGATGAGAGGCTCTTGGGTGACAATTG
GTGTGACCTTTGCAGCCATGGTTGGAGCTGGAATGCTGGTACGATCAATACCATATGACCAGAGCCCAGG
CCCAAAGCATCTTGCTTGGTTGCTACATTCTGGTGTGATGGGTGCAGTGGTGGCTCCTCTGACAATATTA
GGGGGTCCTCTTCTCATCAGAGCTGCATGGTACACAGCTGGCATTGTGGGAGGCCTCTCCACTGTGGCCA
TGTGTGCGCCCAGTGAAAAGTTTCTGAACATGGGTGCACCCCTGGGAGTGGGCCTGGGTCTCGTCTTTGT
GTCCTCATTGGGATCTATGTTTCTTCCACCTACCACCGTGGCTGGTGCCACTCTTTACTCAGTGGCAATG
TACGGTGGATTAGTTCTTTTCAGCATGTTCCTTCTGTATGATACCCAGAAAGTAATCAAGCGTGCAGAAG
TATCACCAATGTATGGAGTTCAAAAATATGATCCCATTAACTCGATGCTGAGTATCTACATGGATACATT
AAATATATTTATGCGAGTTGCAACTATGCTGGCAACTGGAGGCAACAGAAAGAAATGA

Translation (345 aa):
MLAARLVCLRTLPSRVFHPAFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGRTGQELKEAALEPS
MEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGLSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTAL
SAIAISRTPVLMNFMMRGSWVTIGVTFAAMVGAGMLVRSIPYDQSPGPKHLAWLLHSGVMGAVVAPLTIL
GGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAM
YGGLVLFSMFLLYDTQKVIKRAEVSPMYGVQKYDPINSMLSIYMDTLNIFMRVATMLATGGNRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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