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Report for CCDS55459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55459.1 Public Homo sapiens X PCDH11X 24 110 108 CCDS HistoryNCBI Gene:27328Re-query CCDS DB by CCDS ID:55459.1Re-query CCDS DB by GeneID:27328See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55459.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406881.3 ENSP00000384758.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406881.3Link to Ensembl Protein Viewer:ENSP00000384758.1Re-query CCDS DB by Nucleotide ID:ENST00000406881Re-query CCDS DB by Protein ID:ENSP00000384758
Original member Current member NCBI NM_001168360.1 NP_001161832.1 Accepted alive Link to Nucleotide Sequence:NM_001168360.1Link to Protein Sequence:NP_001161832.1Re-query CCDS DB by Nucleotide ID:NM_001168360Re-query CCDS DB by Protein ID:NP_001161832Link to BLAST:NP_001161832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161832.1 1339 Q9BZA7-8 1339 100% 0 0

Chromosomal Locations for CCDS 55459.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 91835505 91836044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 91876781 91879273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 92201375 92201455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 92263114 92263143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 92387735 92387933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 92618264 92618940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4020 nt):
ATGGACTTGTTGTCCGGGACGTACATTTTCGCGGTCCTGCTAGCATGCGTGGTGTTCCACTCTGGCGCCC
AGGAGAAAAACTACACCATCCGAGAAGAAATGCCAGAAAACGTCCTGATAGGCGACTTGTTGAAAGACCT
TAACTTGTCGCTGATTCCAAACAAGTCCTTGACAACTGCTATGCAGTTCAAGCTAGTGTACAAGACCGGA
GATGTGCCACTGATTCGAATTGAAGAGGATACTGGTGAGATCTTCACTACTGGCGCTCGCATTGATCGTG
AGAAATTATGTGCTGGTATCCCAAGGGATGAGCATTGCTTTTATGAAGTGGAGGTTGCCATTTTGCCGGA
TGAAATATTTAGACTGGTTAAGATACGTTTTCTGATAGAAGATATAAATGATAATGCACCATTGTTCCCA
GCAACAGTTATCAACATATCAATTCCAGAGAACTCGGCTATAAACTCTAAATATACTCTCCCAGCGGCTG
TTGATCCTGACGTAGGAATAAACGGAGTTCAAAACTACGAACTAATTAAGAGTCAAAACATTTTTGGCCT
CGATGTCATTGAAACACCAGAAGGAGACAAGATGCCACAACTGATTGTTCAAAAGGAGTTAGATAGGGAA
GAGAAGGATACCTACGTGATGAAAGTAAAGGTTGAAGATGGTGGCTTTCCTCAAAGATCCAGTACTGCTA
TTTTGCAAGTGAGTGTTACTGATACAAATGACAACCACCCAGTCTTTAAGGAGACAGAGATTGAAGTCAG
TATACCAGAAAATGCTCCTGTAGGCACTTCAGTGACACAGCTCCATGCCACAGATGCTGACATAGGTGAA
AATGCCAAGATCCACTTCTCTTTCAGCAATCTAGTCTCCAACATTGCCAGGAGATTATTTCACCTCAATG
CCACCACTGGACTTATCACAATCAAAGAACCACTGGATAGGGAAGAAACACCAAACCACAAGTTACTGGT
TTTGGCAAGTGATGGTGGATTGATGCCAGCAAGAGCAATGGTGCTGGTAAATGTTACAGATGTCAATGAT
AATGTCCCATCCATTGACATAAGATACATCGTCAATCCTGTCAATGACACAGTTGTTCTTTCAGAAAATA
TTCCACTCAACACCAAAATTGCTCTCATAACTGTGACGGATAAGGATGCGGACCATAATGGCAGGGTGAC
ATGCTTCACAGATCATGAAATCCCTTTCAGATTAAGGCCAGTATTCAGTAATCAGTTCCTCCTGGAGACT
GCAGCATATCTTGACTATGAGTCCACAAAAGAATATGCCATTAAATTACTGGCTGCAGATGCTGGCAAAC
CTCCTTTGAATCAGTCAGCAATGCTCTTCATCAAAGTGAAAGATGAAAATGACAATGCTCCAGTTTTCAC
CCAGTCTTTCGTAACTGTTTCTATTCCTGAGAATAACTCTCCTGGCATCCAGTTGACGAAAGTAAGTGCA
ATGGATGCAGACAGTGGGCCTAATGCTAAGATCAATTACCTGCTAGGCCCTGATGCTCCACCTGAATTCA
GCCTGGATTGTCGTACAGGCATGCTGACTGTAGTGAAGAAACTAGATAGAGAAAAAGAGGATAAATATTT
ATTCACAATTCTGGCAAAAGATAACGGGGTACCACCCTTAACCAGCAATGTCACAGTCTTTGTAAGCATT
ATTGATCAGAATGACAATAGCCCAGTTTTCACTCACAATGAATACAACTTCTATGTCCCAGAAAACCTTC
CAAGGCATGGTACAGTAGGACTAATCACTGTAACTGATCCTGATTATGGAGACAATTCTGCAGTTACGCT
CTCCATTTTAGATGAGAATGATGACTTCACCATTGATTCACAAACTGGTGTCATCCGACCAAATATTTCA
TTTGATAGAGAAAAACAAGAATCTTACACTTTCTATGTAAAGGCTGAGGATGGTGGTAGAGTATCACGTT
CTTCAAGTGCCAAAGTAACCATAAATGTGGTTGATGTCAATGACAACAAACCAGTTTTCATTGTCCCTCC
TTCCAACTGTTCTTATGAATTGGTTCTACCGTCCACTAATCCAGGCACAGTGGTCTTTCAGGTAATTGCT
GTTGACAATGACACTGGCATGAATGCAGAGGTTCGTTACAGCATTGTAGGAGGAAACACAAGAGATCTGT
TTGCAATCGACCAAGAAACAGGCAACATAACATTGATGGAGAAATGTGATGTTACAGACCTTGGTTTACA
CAGAGTGTTGGTCAAAGCTAATGACTTAGGACAGCCTGATTCTCTCTTCAGTGTTGTAATTGTCAATCTG
TTCGTGAATGAGTCGGTGACCAATGCTACACTGATTAATGAACTGGTGCGCAAAAGCACTGAAGCACCAG
TGACCCCAAATACTGAGATAGCTGATGTATCCTCACCAACTAGTGACTATGTCAAGATCCTGGTTGCAGC
TGTTGCTGGCACCATAACTGTCGTTGTAGTTATTTTCATCACTGCTGTAGTAAGATGTCGCCAGGCACCA
CACCTTAAGGCTGCTCAGAAAAACAAGCAGAATTCTGAATGGGCTACCCCAAACCCAGAAAACAGGCAGA
TGATAATGATGAAGAAAAAGAAAAAGAAGAAGAAGCATTCCCCTAAGAACTTGCTGCTTAATTTTGTCAC
TATTGAAGAAACTAAGGCAGATGATGTTGACAGTGATGGAAACAGAGTCACACTAGACCTTCCTATTGAT
CTAGAAGAGCAAACAATGGGAAAGTACAATTGGGTAACTACACCTACTACTTTCAAGCCCGACAGCCCTG
ATTTGGCCCGACACTACAAATCTGCCTCTCCACAGCCTGCCTTCCAAATTCAGCCTGAAACTCCCCTGAA
TTCGAAGCACCACATCATCCAAGAACTGCCTCTCGATAACACCTTTGTGGCCTGTGACTCTATCTCCAAG
TGTTCCTCAAGCAGTTCAGATCCCTACAGCGTTTCTGACTGTGGCTATCCAGTGACGACCTTCGAGGTAC
CTGTGTCCGTACACACCAGACCGCCAATGAAGGAGGTTGTGCGATCTTGCACCCCCATGAAAGAGTCTAC
AACTATGGAGATCTGGATTCATCCCCAACCACAGCGGAAATCTGAAGGGAAAGTGGCAGGAAAGTCCCAG
CGGCGTGTCACATTTCACCTGCCAGAAGGCTCTCAGGAAAGCAGCAGTGATGGTGGACTGGGAGACCATG
ATGCAGGCAGCCTTACCAGCACATCTCATGGCCTGCCCCTTGGCTATCCTCAGGAGGAGTACTTTGATCG
TGCTACACCCAGCAATCGCACTGAAGGGGATGGCAACTCCGATCCTGAATCTACTGCAGAAATAACTGTT
CAACCAACTGTGGAAGAGGCCTCTGACAACTGCACTCAAGAATGTCTCATCTATGGCCATTCTGATGCCT
GCTGGATGCCGGCATCTCTGGATCATTCCAGCTCTTCGCAAGCACAGGCCTCTGCTCTATGCCACAGCCC
ACCACTGTCACAGGCCTCTACTCAGCACCACAGCCCACGAGTGACACAGACCATTGCTCTCTGCCACAGC
CCTCCAGTGACACAGACCATCGCATTGTGCCACAGCCCACCACCGATACAGGTGTCTGCTCTCCACCACA
GTCCTCCTCTAGTGCAGGCTACTGCACTTCACCACAGCCCACCATCAGCACAGGCCTCAGCCCTCTGCTA
CAGCCCTCCTTTAGCACAGGCTGCTGCAATCAGCCACAGCTCTCCTCTGCCACAGGTTATTGCCCTCCAT
CGTAGTCAGGCCCAATCATCAGTCAGTTTGCAGCAAGGTTGGGTGCAAGGTGCTGATGGGCTATGCTCTG
TTGATCAGGGAGTGCAAGGTAGTGCAACATCTCAGTTTTACACCATGTCTGAAAGACTTCATCCCAGTGA
TGATTCAATTAAAGTCATTCCTTTGACAACCTTCACTCCACGCCAACAGGCCAGACCGTCCAGAGGTGAT
TCCCCCATTATGGAAGAACATCCCTTGTAA

Translation (1339 aa):
MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTG
DVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFP
ATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDRE
EKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE
NAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVND
NVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLET
AAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSA
MDADSGPNAKINYLLGPDAPPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSI
IDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNIS
FDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPGTVVFQVIA
VDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNL
FVNESVTNATLINELVRKSTEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAP
HLKAAQKNKQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPID
LEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVACDSISK
CSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTMEIWIHPQPQRKSEGKVAGKSQ
RRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTAEITV
QPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHS
PPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALH
RSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTPRQQARPSRGD
SPIMEEHPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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