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Report for CCDS30095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30095.1 Public Mus musculus X C1galt1c1 23 108 98 CCDS HistoryNCBI Gene:59048Re-query CCDS DB by CCDS ID:30095.1Re-query CCDS DB by GeneID:59048See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058265.7 ENSMUSP00000059224.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058265.7Link to Ensembl Protein Viewer:ENSMUSP00000059224.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058265Re-query CCDS DB by Protein ID:ENSMUSP00000059224
Original member Current member NCBI NM_021550.3 NP_067525.1 Accepted alive Link to Nucleotide Sequence:NM_021550.3Link to Protein Sequence:NP_067525.1Re-query CCDS DB by Nucleotide ID:NM_021550Re-query CCDS DB by Protein ID:NP_067525Link to BLAST:NP_067525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067525.1 316 Q9JMG2 316 100% 0 0

Chromosomal Locations for CCDS 30095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38631167 38632117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCTTTCAGAAAGCAGTTCCTTTTTGAAGGGTGTGATGCTTGGAAGCATCTTCTGTGCCTTGATCACTA
TGCTAGGCCACATTAGGATTGGAAACAGAATGCACCACCATGAGCATCACCATCTGCAAGCCCCTAACAA
AGACGATATCTCGAAAATTTCAGAGGCTGAACGCATGGAGCTCAGTAAGAGTTTCCGGGTATACTGTATA
GTTCTTGTAAAACCCAAAGATGTGAGTCTTTGGGCTGCAGTGAAGGAGACTTGGACCAAACACTGTGACA
AAGCAGAATTCTTCAGTTCTGAAAATGTTAAAGTGTTTGAGTCAATTAATATGGACACAAATGACATGTG
GTTGATGATGAGGAAAGCTTACAAATATGCTTATGATCAATACAGGGACCAATACAACTGGTTCTTCCTT
GCACGCCCCACTACTTTCGCTGTTATTGAAAACCTCAAATATTTTTTGTTAAAAAAGGATCAATCCCAAC
CTTTCTATCTCGGACACACTGTAAAATCTGGAGACCTTGAATATGTGAGTGTGGATGGAGGAATTGTCTT
AAGCATAGAATCAATGAAAAGACTCAACAGTCTTCTCAGTGTTCCTGAAAAGTGTCCTGAACAAGGAGGA
ATGATTTGGAAGATATCTGAAGATAAACAGCTGGCGGTCTGCCTGAAATACGCCGGAGTATTTGCAGAAA
ATGCCGAAGATGCCGATGGAAAAGATGTGTTTAATACCAAATCCGTTGGCCTTTTCATTAAAGAGGCAAT
GACTAACCAACCAAACCAGGTAGTAGAAGGCTGTTGCTCTGATATGGCTGTTACTTTCAATGGACTGACT
CCTAATCAGATGCACGTGATGATGTATGGGGTGTACCGGCTTAGGGCATTTGGACATGTTTTCAATGATG
CATTGGTTTTCTTACCTCCAAATGGTTCTGAGAATGACTGA

Translation (316 aa):
MLSESSSFLKGVMLGSIFCALITMLGHIRIGNRMHHHEHHHLQAPNKDDISKISEAERMELSKSFRVYCI
VLVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINMDTNDMWLMMRKAYKYAYDQYRDQYNWFFL
ARPTTFAVIENLKYFLLKKDQSQPFYLGHTVKSGDLEYVSVDGGIVLSIESMKRLNSLLSVPEKCPEQGG
MIWKISEDKQLAVCLKYAGVFAENAEDADGKDVFNTKSVGLFIKEAMTNQPNQVVEGCCSDMAVTFNGLT
PNQMHVMMYGVYRLRAFGHVFNDALVFLPPNGSEND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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