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Report for CCDS22318.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22318.2 Public Mus musculus 8 Galntl6 23 108 98 CCDS HistoryNCBI Gene:270049Re-query CCDS DB by CCDS ID:22318.2See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22318.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204128.2 ENSMUSP00000145321.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204128.2Link to Ensembl Protein Viewer:ENSMUSP00000145321.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204128Re-query CCDS DB by Protein ID:ENSMUSP00000145321
Original member NCBI NM_175032.3 NP_778197.2 Updated not alive Link to Nucleotide Sequence:NM_175032.3Link to Protein Sequence:NP_778197.2Re-query CCDS DB by Nucleotide ID:NM_175032Re-query CCDS DB by Protein ID:NP_778197
Current member NCBI NM_175032.4 NP_778197.2 Accepted alive Link to Nucleotide Sequence:NM_175032.4Link to Protein Sequence:NP_778197.2Re-query CCDS DB by Nucleotide ID:NM_175032Re-query CCDS DB by Protein ID:NP_778197Link to BLAST:NP_778197.2

Chromosomal Locations for CCDS 22318.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 57777182 57777349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57794881 57795030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57804214 57804330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57837187 57837408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57857517 57857624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57884399 57884516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57958272 57958455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57962379 57962564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58427700 58427866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58472844 58472982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58535906 58536014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 58911337 58911474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGAAGAGGAAACAGAAGAGGTTTCTGCAAATGACTTTGTTATTCACCGTGGCTTTAATTTTCCTGCCCA
ACATTGGTCTCTGGTCTTTGTACAAGGATAAACACCTGGTGAAATCTGCAGAACCCGCGGAGCATCAGAC
ATTTCCACTGGGCCTAGGAGATGGGCAATTCTATTCCTGGACAGATGGTCTGAGAAGAAAAGACTGGCAT
GACTATGAGAGCATTCAGAGAGATGCTTTGCGCTCAGGGAAAGGTGAACATGGAAAACCATACCCACTTA
CTGAAGAGGACCGGGATGACTCAGCTTACAGGGAAAATGGCTTCAACATTTTTGTCAGCAACAATATTGC
TCTAGAGAGGTCTCTGCCAGACATCCGCCATGCCAACTGTAAGCACAAGATGTACCTTGAAAGGCTGCCA
AACACCAGCATCATTATCCCATTTCACAACGAAGGTTGGACCTCACTCTTGCGGACCATACACAGTATAA
TCAACCGAACACCAGAGAGTCTGATAGCAGAAATCATTCTAGTCGATGACTTCAGTGATAGAGAACACTT
GAAGGATAAATTAGAAGATTACATGGCTCGGTTTTCCAAAGTGAGAATTGTACGCACCAAGAAAAGGGAA
GGTCTCATCCGGACCCGACTCCTGGGAGCTTCCGTGGCTAGAGGAGAGGTGCTGACCTTCCTAGACTCCC
ACTGTGAGGTCAATGTGAACTGGCTGCCCCCGCTCCTCAACCAAATTGCACTAAACCACAAAACCATCGT
GTGTCCCATGATCGATGTCATTGACCACAATCACTTTGGGTATGAGGCACAAGCTGGGGATGCCATGCGA
GGAGCCTTCGACTGGGAAATGTACTACAAAAGAATCCCGATCCCTCCAGAGCTGCAGAGGGCTGACCCCA
GCGACCCCTTTGAGTCTCCGGTTATGGCTGGAGGTCTCTTTGCAGTGGATCGAAAGTGGTTTTGGGAACT
GGGTGGCTATGACCCAGGCTTGGAAATCTGGGGAGGAGAGCAGTATGAAATCTCTTTTAAGGTTTGGATG
TGTGGAGGAGAAATGTTTGACGTTCCGTGTTCTAGAGTCGGTCATATCTACAGGAAGTATGTCCCTTATA
AAGTTCCATCTGGGACCAGCCTAGCAAGAAACCTGAAGCGTGTGGCTGAGACCTGGATGGATGAATTTGC
TGAGTACATTTACCAGAGGCGGCCAGAGTACAGGCACCTCTCCACCGGAGACATCTCTGCCCAGAAGGAG
TTGCGGAAGCGACTCAAGTGCAAAGACTTCAAGTGGTTCATGGCTGCTGTGGCCTGGGACGTGCCTAAGT
ACTACCCTCCGGTCGAGCCCCTGCCTGCAGCGTGGGGTGAGATTCGAAGTGTGGCAGCCAACTTATGTGT
GGATAGCAAGCATGGAGCCACAGGGACCGAGCTCAGGCTGGACGTCTGTGTCAAGGATGGCTCTGAAAGG
ACATGGTCTCACGAACAGCTCTTTACTTTCGGGTGGAGAGAAGATATTCGACCCGGTGAGCCTCTGCACA
CCCGAAAATTCTGCCTGGATGCCATCTCACACAGCAGCCCTGTCACCCTCTATGACTGTCACGGCATGAA
AGGGAACCAGCTCTGGGGATACCGGGAGGACAGAACATTATTTCATCCTGTGAGCAACAGCTGTATGGAT
TGCAACCCCTCAGAGAAGAAGATTTTCATGGCCAGATGTGACCCTCTATCTGAGACTCAGCAATGGATTT
TTGAACATATCAACATGACTGTTTTAGAAAAAAATAGCCACTATGCCATCTCCTAG

Translation (601 aa):
MKRKQKRFLQMTLLFTVALIFLPNIGLWSLYKDKHLVKSAEPAEHQTFPLGLGDGQFYSWTDGLRRKDWH
DYESIQRDALRSGKGEHGKPYPLTEEDRDDSAYRENGFNIFVSNNIALERSLPDIRHANCKHKMYLERLP
NTSIIIPFHNEGWTSLLRTIHSIINRTPESLIAEIILVDDFSDREHLKDKLEDYMARFSKVRIVRTKKRE
GLIRTRLLGASVARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHNHFGYEAQAGDAMR
GAFDWEMYYKRIPIPPELQRADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWM
CGGEMFDVPCSRVGHIYRKYVPYKVPSGTSLARNLKRVAETWMDEFAEYIYQRRPEYRHLSTGDISAQKE
LRKRLKCKDFKWFMAAVAWDVPKYYPPVEPLPAAWGEIRSVAANLCVDSKHGATGTELRLDVCVKDGSER
TWSHEQLFTFGWREDIRPGEPLHTRKFCLDAISHSSPVTLYDCHGMKGNQLWGYREDRTLFHPVSNSCMD
CNPSEKKIFMARCDPLSETQQWIFEHINMTVLEKNSHYAIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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