NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49523.1 Public Mus musculus 14 Scara5 23 108 98 CCDS HistoryNCBI Gene:71145Re-query CCDS DB by CCDS ID:49523.1Re-query CCDS DB by GeneID:71145See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49523.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069226.6 ENSMUSP00000063391.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069226.6Link to Ensembl Protein Viewer:ENSMUSP00000063391.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069226Re-query CCDS DB by Protein ID:ENSMUSP00000063391
Original member Current member NCBI NM_001168318.1 NP_001161790.1 Accepted alive Link to Nucleotide Sequence:NM_001168318.1Link to Protein Sequence:NP_001161790.1Re-query CCDS DB by Nucleotide ID:NM_001168318Re-query CCDS DB by Protein ID:NP_001161790Link to BLAST:NP_001161790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161790.1 387 Q8K299-2 387 100% 0 0

Chromosomal Locations for CCDS 49523.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65670563 65670674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65689768 65689896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65730521 65731195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65738424 65738504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65740290 65740388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65742132 65742179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65743142 65743161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGACAACAAAGCCATGTACCTGCACACCGTGAGTGACCGTGACAACGGCTCCATCTTTGAAGAACCCT
TTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATGGTCCATGTCACAAACGGCGGGCGGGAGG
CTGCTGTACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCTGTATCTTCTGGTCTTC
CTGATTCTTGTGGGTATCTTCATCTTAGCAGTGTCCCGGCCTCGAAGCTCCCCAGATGACTTGAAGGCGC
TGACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCAGGCTCCATT
GCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAACCAGACAGACTCGTTGTTG
GCCCTGGCCGGCTTGGTGCAGAGGCTGGAGGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTG
AGCAGGCGATGGCCCTGCTGCGGGACCGAACAGGACAGCAGAGTGACTCCGCACAGCTGGAACTCTACCA
GCTGCAGGTGGAAAGCAATCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCTGCTGGATGGGCTAGCA
CGCAGGGTGGGGGTCCTGGGGGAGGAGCTGGCTGACGTGGGCGGTGCGCTCCGTGGTCTCAACCACAGCC
TGTCCTATGACGTGGCCCTGCACAGCACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGC
AGACACTCGCCGTATGCGGCTGGTGCACATGGACATGGAGATGCAGCTCAAGCAGGAGCTGGCCACACTC
AACGTGGTGACCGAGGACCTGCGTCTGAAGGACTGGGAACACTCCATCGCCTTGAGGAACATCACCCTTG
CCAAAGGGCCACCGGGACCCAAAGGTGACCAAGGAAATGAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGG
ACTTCCTGGATCTCGAGGTCTGCCAGGAGAGAGAGGTGACCCAGGACTGCCTGGTCCCAAGGGTGATGAT
GGGAAGCTAGGGGCTACGGGCCCCATGGGCATGCGCGGATTCAAAGGTGATCGAGGCCCAAAAGGAGAGA
AAGGAGAGAGAGGAGAGAGAGCTGAATGTTGCCGAGGTGGCTGA

Translation (387 aa):
MDNKAMYLHTVSDRDNGSIFEEPFDGRSLSKLNLCEDGPCHKRRAGGCCTQLGSLSALKHAVLGLYLLVF
LILVGIFILAVSRPRSSPDDLKALTRNVNRLNESLRDMQLRLLQAPLQADLTEQVWKVQDALQNQTDSLL
ALAGLVQRLEGTLWGLHAQAAQTEQAMALLRDRTGQQSDSAQLELYQLQVESNRSQLLLQRHAGLLDGLA
RRVGVLGEELADVGGALRGLNHSLSYDVALHSTWLQDLQVLVSNASADTRRMRLVHMDMEMQLKQELATL
NVVTEDLRLKDWEHSIALRNITLAKGPPGPKGDQGNEGKEGKPGSPGLPGSRGLPGERGDPGLPGPKGDD
GKLGATGPMGMRGFKGDRGPKGEKGERGERAECCRGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH