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Report for CCDS27781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27781.1 Public Mus musculus 15 Pced1b 23 108 98 CCDS HistoryNCBI Gene:239647Re-query CCDS DB by CCDS ID:27781.1Re-query CCDS DB by GeneID:239647See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059433.7 ENSMUSP00000055485.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059433.7Link to Ensembl Protein Viewer:ENSMUSP00000055485.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059433Re-query CCDS DB by Protein ID:ENSMUSP00000055485
Original member Current member EBI ENSMUST00000228521.1 ENSMUSP00000154814.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228521.1Link to Ensembl Protein Viewer:ENSMUSP00000154814.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228521Re-query CCDS DB by Protein ID:ENSMUSP00000154814
Original member NCBI NM_172293.4 NP_758497.1 Updated not alive Link to Nucleotide Sequence:NM_172293.4Link to Protein Sequence:NP_758497.1Re-query CCDS DB by Nucleotide ID:NM_172293Re-query CCDS DB by Protein ID:NP_758497
Current member NCBI NM_172293.5 NP_758497.1 Accepted alive Link to Nucleotide Sequence:NM_172293.5Link to Protein Sequence:NP_758497.1Re-query CCDS DB by Nucleotide ID:NM_172293Re-query CCDS DB by Protein ID:NP_758497Link to BLAST:NP_758497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758497.1 433 Q8BGX1 433 100% 0 0

Chromosomal Locations for CCDS 27781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 97384082 97385383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGGTCCGCCTGTTGGCCTCCGAAGTACAGCAGCTACTCCACAACAAGTTTGTGGTCGTCCTTGGGGACT
CTGTGCATAGGGCGGTGTACAAGGACCTGGTGCTCCTGCTGCAGAAGGATTGCCTGCTCACTAACAAGCA
GCTCAGGACCAAGGGGGAGCTGAGCTTTGAGAAGGACCAGCTGAAGATGGGAGGCGAGCTGGATACCCTG
CACAACCGCACGGACTACCGCGAGGTGCGCGAGTTCTGCTCTGACCACCATCTGGTGCGCTTCTACTTCC
TCACGCGGGTCTACTCTGAGTACATGGAGAGCGTCCTAGAGGAGCTCCAATCCGGCAATCACGCCCCAGA
TGTGATCATTATGAACTCTTGCCTCTGGGACGTCTCCAGGTATGGGCGGAATTCCTTGAGTAGCTACAAG
CAGAACCTGGAAAACTTGTTTGGGCGCATGGACCAGGTGCTGCCCAAGTCGTGCCTGCTAGTGTGGAACA
CTGCTATGCCTTTGGGTGACAAGATCAAGGCGGCCTTCCTCCCACAGAAGTGTAAGGGCCAGTACCCCCG
GATCTCGGTAGCCACCCTGAAAAGGAAAGTGACCCAAGCCAATCTCTATAGCCATGCGGAAGCAACAAAG
CACTATTTCGATGTGCTGGACTTAAATTTCCACTTCCGGCAAGCCAGAAAGCACCTGCAGGGAGATGGCG
TGCACTGGAATGAGCATGCGCACCGCAAGCTCTCCTACCTGCTGCTGGCCCACATGGCCGATGCATGGGG
TGTGGAGTTGCCCCAGAGAGACTCATGGGAGCCTGATTTTGAGGCGTGGGAAAGTTCAGGCCAGGTAGAG
GAAAGGCAGCCCCAAGACAACCTAGGACCTCAGGTGTTTGCCCCTTCTCCACATTGTCCTTTTAGACCAC
CTCCCCTTCTCCCATCCCCTGGCTTGCCCATAAGGCCCCCACCCCTACTAGGATGTCCCCTGCCCCAGCC
CCAGCAGATGCCCCCATTCCCACTCTATCCTCAAGTTTCCTATTTTTCCTCAGACCCTGTTTTCCAGTCA
GATGAATTCTATATCCATTCCGATAGCCCCCCACCTACCCACACTGGATATGCCTTTGAGGGCGACTTTA
GCTTTTATCCCCAGCCACCTGTGCCCAACTTCCGCCCACCCTGTCATCAGCGTCAGGCCCCGGTAGTACA
TAGGGGCTTCCCAAGGCATTTTGCTCGTGGCCCCTATAGTAATCCTTGGAGAGACAGACCCAGGCGACCG
CCAAAACATTCTCCAGCCGGCCTAGAGTCAAGGCCCCAGTAG

Translation (433 aa):
MVRLLASEVQQLLHNKFVVVLGDSVHRAVYKDLVLLLQKDCLLTNKQLRTKGELSFEKDQLKMGGELDTL
HNRTDYREVREFCSDHHLVRFYFLTRVYSEYMESVLEELQSGNHAPDVIIMNSCLWDVSRYGRNSLSSYK
QNLENLFGRMDQVLPKSCLLVWNTAMPLGDKIKAAFLPQKCKGQYPRISVATLKRKVTQANLYSHAEATK
HYFDVLDLNFHFRQARKHLQGDGVHWNEHAHRKLSYLLLAHMADAWGVELPQRDSWEPDFEAWESSGQVE
ERQPQDNLGPQVFAPSPHCPFRPPPLLPSPGLPIRPPPLLGCPLPQPQQMPPFPLYPQVSYFSSDPVFQS
DEFYIHSDSPPPTHTGYAFEGDFSFYPQPPVPNFRPPCHQRQAPVVHRGFPRHFARGPYSNPWRDRPRRP
PKHSPAGLESRPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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