NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54661.1 Public Homo sapiens 3 VEPH1 24 110 108 CCDS HistoryNCBI Gene:79674Re-query CCDS DB by CCDS ID:54661.1Re-query CCDS DB by GeneID:79674See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000468233.5 ENSP00000417268.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468233.5Link to Ensembl Protein Viewer:ENSP00000417268.1Re-query CCDS DB by Nucleotide ID:ENST00000468233Re-query CCDS DB by Protein ID:ENSP00000417268
Original member Current member EBI ENST00000494677.5 ENSP00000419193.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000494677.5Link to Ensembl Protein Viewer:ENSP00000419193.1Re-query CCDS DB by Nucleotide ID:ENST00000494677Re-query CCDS DB by Protein ID:ENSP00000419193
Original member Current member NCBI NM_001167915.3 NP_001161387.1 Accepted alive Link to Nucleotide Sequence:NM_001167915.3Link to Protein Sequence:NP_001161387.1Re-query CCDS DB by Nucleotide ID:NM_001167915Re-query CCDS DB by Protein ID:NP_001161387Link to BLAST:NP_001161387.1
Original member Current member NCBI NM_001167916.3 NP_001161388.1 Accepted alive Link to Nucleotide Sequence:NM_001167916.3Link to Protein Sequence:NP_001161388.1Re-query CCDS DB by Nucleotide ID:NM_001167916Re-query CCDS DB by Protein ID:NP_001161388Link to BLAST:NP_001161388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161387.1 213 Q14D04-3 213 100% 0 0
NP_001161388.1 213 Q14D04-3 213 100% 0 0

Chromosomal Locations for CCDS 54661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 157460068 157460355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157470314 157470529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157495212 157495349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGCATCAACTGTTCAGACTGGTTTTGGGACAAAAAGATCTTTCACGAGCTGGGGACCTCTTCTCCTTAG
ATGACTCTGAGATTGAAGACAGCCTTACAGAAGCTTTGGAGCAAATTAAGATAATTAGCTCATCTTCAGA
TTACCAAACCAATAACAATGACCAGGCAGTAGTTGAAATCTGTATCACAAGAATCACAACAGCCATCAGA
GAGACCGAGTCCATTGAAAAGCATGCAAAGGCCCTTGTGGGGCTCTGGGACTCCTGCTTGGAACATAACC
TGAGACCCTTTGGGAAAGACGAAGACACTCCTCATGCAAAAATCGCATCTGATATCATGAGTTGCATTTT
ACAGAATTACAACCGACCCCCAGTGATGGCATTAGCCATCCCCATTGCAGTGAAATTCCTCCACAGAGGC
AACAAGGAACTGTGCAGGAATATGTCTAACTACCTGTCTCTGGCTGCAATTACCAAGGCAGATCTCCTGG
CTGATCACACGGAAGTTATAGTAAAGAGCATACTCCAAGGTATGGTGCGAAAGTTGAGCTTGGGGACATG
TTTTGGGAGATATTTAAAAGTATTTTCATCAAGCATTTATGGTTTGTGGGAAGCAAGACCTAGAGTATTA
GAAGCAAATTAA

Translation (213 aa):
MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIR
ETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPIAVKFLHRG
NKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGMVRKLSLGTCFGRYLKVFSSSIYGLWEARPRVL
EAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH