NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30340.1 Public Mus musculus X Taf9b 23 108 98 CCDS HistoryNCBI Gene:407786Re-query CCDS DB by CCDS ID:30340.1Re-query CCDS DB by GeneID:407786See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055497.14 ENSMUSP00000059751.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055497.14Link to Ensembl Protein Viewer:ENSMUSP00000059751.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000055497Re-query CCDS DB by Protein ID:ENSMUSP00000059751
Original member Current member NCBI NM_001001176.2 NP_001001176.2 Accepted alive Link to Nucleotide Sequence:NM_001001176.2Link to Protein Sequence:NP_001001176.2Re-query CCDS DB by Nucleotide ID:NM_001001176Re-query CCDS DB by Protein ID:NP_001001176Link to BLAST:NP_001001176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001176.2 249 Q6NZA9 249 100% 0 0

Chromosomal Locations for CCDS 30340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106208494 106208657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106209707 106209817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106216127 106216196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106218097 106218231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106218310 106218446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106218896 106218977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106219579 106219629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGAGCCGGCCAAGATGGCGCCTATCAAGAACGCTCCGAGAGATGCCTTGGTGATGGCACAGATCCTGA
AGGATATGGGAATCACAGAGTATGAGCCAAGGGTTATAAATCAAATGTTGGAATTTGCTTTCCGATATGT
GACTACAATTCTGGACGATGCAAAGATTTATTCGAGTCATGCTAAGAAACCCACTGTTGATGCCGATGAC
GTGAGACTGGCCATCCAGTGTCGGGCTGACCAGTCCTTTACCTCTCCTCCCCCAAGAGATTTTTTACTAG
ATATTGCAAGGCAGAAGAATCAAACCCCTTTGCCGCTGATTAAGCCATATGCAGGACCCAGACTGCCACC
TGATAGATACTGCTTAACAGCTCCAAACTATAGGCTGAAGTCCTTAGTTAAAAAGGGACCTAACCAAGGA
AGACTAGTGCCTAGATTAAGTGCGGTCAGTAGTAGACCAACTACTCCTCCTGTAGCACCCCCACAAGCAG
TATCTGGCCCAAATAAGGCTGCAACTCCGGTGTCAGTGACAAGCCAAAGATTTGCTGTGCAGATTCCACC
TTCTCAGTCCACACCTGCCAAGCCAGCTCCTGCAGCAACTGCAGTCCAAAATGTTCTGATTAATCCTTCA
ATGATTGGGCCCAAAAATATTCTCATTACCACCAGCATGGTTTCCTCACAGAACACAGCCACCGACTCAA
ACCCACTGAAGAGGAAGCATGATGACGACGATGACAATGACACCATGTAA

Translation (249 aa):
MEPAKMAPIKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADD
VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLVKKGPNQG
RLVPRLSAVSSRPTTPPVAPPQAVSGPNKAATPVSVTSQRFAVQIPPSQSTPAKPAPAATAVQNVLINPS
MIGPKNILITTSMVSSQNTATDSNPLKRKHDDDDDNDTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH