NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38760.1 Public Mus musculus 4 Tex10 23 108 98 CCDS HistoryNCBI Gene:269536Re-query CCDS DB by CCDS ID:38760.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030030.14 ENSMUSP00000030030.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030030.14Link to Ensembl Protein Viewer:ENSMUSP00000030030.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030030Re-query CCDS DB by Protein ID:ENSMUSP00000030030
Original member Current member EBI ENSMUST00000164866.1 ENSMUSP00000132498.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164866.1Link to Ensembl Protein Viewer:ENSMUSP00000132498.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164866Re-query CCDS DB by Protein ID:ENSMUSP00000132498
Original member Current member NCBI NM_001355740.1 NP_001342669.1 Accepted alive Link to Nucleotide Sequence:NM_001355740.1Link to Protein Sequence:NP_001342669.1Re-query CCDS DB by Nucleotide ID:NM_001355740Re-query CCDS DB by Protein ID:NP_001342669Link to BLAST:NP_001342669.1
Original member Current member NCBI NM_172304.4 NP_758508.2 Accepted alive Link to Nucleotide Sequence:NM_172304.4Link to Protein Sequence:NP_758508.2Re-query CCDS DB by Nucleotide ID:NM_172304Re-query CCDS DB by Protein ID:NP_758508Link to BLAST:NP_758508.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342669.1 928 Q3URQ0 928 100% 0 0
NP_758508.2 928 Q3URQ0 928 100% 0 0

Chromosomal Locations for CCDS 38760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48430970 48431083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48433108 48433318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48434902 48435083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48436437 48436517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48451926 48452059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48452893 48452981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48456734 48456911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48458538 48458713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48459251 48459386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48459864 48460102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48462769 48462881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48467664 48467904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48468281 48468993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48469884 48470063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2787 nt):
ATGACCAAAAAAAGGAAACGCCAAGATGATTTTCAGAAAGTAAAACTAAAAGTTGGTAAAAAGAAGCCCA
AGTTAGAAAATGCTACAGCTACAAACTTTAAGACAAAGGCTATACATTTGCCTGAACAACTTAAAGAGGA
TAGAACACTTCCGACAAACAATAGAAAGCTTAACATAAAGGATTTGCTGTCACAGATGCATCACTATAGT
GGTGGTGTTAAACAAAGTGCTCTTCTTGGACTTAAAGACCTTTTGTCTCAATACCCATTTATAATTGATG
CACACCTCTCAAACATATTAAGTGAAGTGACTGCTGTGTTTACAGATAGAGATGCTAATGTACGGTTAGC
AGCAGTTCAACTTCTTCAATTCCTGGCCCCCAAAATACGAACTGAACACATTTCTCCATTTTTTCCTTTG
GTAAGTGCCCATCTCTCTAGTGCCATGACTCACATTACTGAAGGAATTCAGGAGGACTCTTTAAAAGTTC
TGGACATTCTGCTGGAGCATTATCCAGCTCTCATTACTGGCCGTAGCAGTATATTGCTTAAGAACTTTGT
AGAACTCATTTCTCATCAGCAGCTGTCCAAAGGACTGGTAAATAGAGACAGATCCCAGTCTTGGATACTT
TCTGTAAATCCTAATCGGAGAGTCACTTCTCAGCAATGGAGGCTGAAAGTCTTAGCAAGACTCAGTAAAT
TCCTTCAGGCCTTGGCAGATGGATCCAGTAGGTTGAGAGAAAGTGAAGGACTTCAGGAACAAAAAGAAAC
TCCCCATGCCACTAGCAACTCCATTTTTATCAACTGGAAGGATCATGCCAACGACCAGCAACAGATCCAG
GTTTATGAAAATGGGGGTTCACAGCCAAATGTCAGTTCACAGTTCAGGCTACGGTGCTTGGGAACACTAG
GCACTGTGGATGAAGACCTGTCATCCCCTGAAAACCTGAAAGGATTCATTGAGATAATAATTCCATTGTT
AATTGAATGCTGGATTGAAGCTTTACCTCCACAACTAGCAGCTTCTGTTGGGAGTGGGGTTGAGCGAGAG
CCTCTGCAGGTTATGCAGCAAGTCCTGAATGTCATTTCACTGTTGTGGAAACTCTCGAAGCAGCAGGATG
AAACCCATACGTTGGAGTCATGGCTTCGAAAAAATTATCTTACTGATTTCAAACATCATTTTATGAGTCA
TTTTCCATATGCCTTAAAAGAAATAACCAAGCAACGGAAGAAAGATACAAATAAAAGCATCAAGCATTGC
ACAGTTCTCTCCAATAATGTAGATCATCTTTTACTGAACTTAACACTGTCTGATATCATGGTCTCGCTGG
CAAATGCTTCAACCTTACAGAATGATTCCAGTTGGATAGAAACAATAAGGAAGTTTGTGACGGAGACCCT
TAAAGGTGGCACTAGATTGAACAGTAAGCAGCTGAACAGGCTGCTTGGAGTCTCTTGGAGGCTAATCCAG
ATGCAACCAAACAGAGATGCTACAGAGAATCTCATTAAGGCAGTTTATACACTGTATCAACAGAGGGGCC
TGCTTCTTCCAGTTAGGACTTTGTTAATCAAATTTTTCAGTAAGATCTATCAGAAAGAAGAATTGAGGTC
TTACAGATTGAGATACCGAAGCAAAGTGCTCTCCCGTTGGCTGGCCGGCTTGCCATTGCAGCTCTCTTAC
CTTGGCTCCCGAAACCCTGAGCTCTCCACACAGCTGATTGATATTATTCACACTGCTGCATCACAAGCAA
ATAAGGACTTATTGAAAAACTTACAAGCTGCCGCTCTACGAATTTATGATCCTCAAGAAGGCGCTGTGGT
AGTTCTTCCTGCAGAGTCTCAGCAACGTCTAGTTCAGCTGTTGTATTTTCTCCCCACTCTGCCTGCTGAT
TTGCTTTCTCAGCTAAGTCGGTGCTGCATAATGGGAAGACTCGGCTCAAGTTTGGCTGTCACGCTTATTG
GGATACTGTACATGAGATCATCTTTTTCTGGATGGAGTCACTCGGTTAATGACTGCTTAATGACTGATGT
GGATTATCTCAGCTTCTTATTTTCTACACTTACAGGGTTTTCAAAAGAGGAGTTGACCTGGCTTCAGAAC
CTTCGAGGCGTTCCTCATGTCGTCCAGACATCACTTTCCCCTGTGCTTCTCTACCTTACAGATTTAGACC
AGTTCTTGCACCACTGGGACATAACAGAGGCAGTTTGTCACAGCTTATTGGTTATTCCTGCCCGAAGCCA
GAGCTTTGACATCATGCAGAGTGCCATCAGTAAGCATTTGGTTGGGTTGACTGTAATTCCTGACAGCACA
GCTGGCTGTATATTTGGAGTGATGTGTAAGCTCCTGGATCATACATGTGTAGTTAATGAAGCTCTCCTGC
CATTCCTGGCTTCTTGTTGCTACAGCCTTCTTTATTTTCTGCTTACTCTAGAGAAAGGAGATGCAGAACA
TCTGAAAAAGAGGGACAAACTGTGGGAGGTCTGTGTCTCCATCCTGGCTCTCCTGCCTAGAGTCCTCAGG
TTGATGCTGCAGAGTCTACGGGTGAACAGAGCTTCTCCTGAGGAGCTGCCTGTTGTAGGCCAGCTGCTTC
GCCTGCTGCTTCAGCATGTGCCTCTTAGGTCGCACATGCTGACTAATGCCATCCTAGTGCAGCAGATCAT
CAAGAATATCACGACTTTAAAGAGTGGCAGTGTTCAGGAGCAGTGGCTTACAGACTTACATTACTGCTTC
AGCGTGTACATCAGTGGCCATCCCCAAGGGCCTAGTATATTGAATGCATTGTATTAA

Translation (928 aa):
MTKKRKRQDDFQKVKLKVGKKKPKLENATATNFKTKAIHLPEQLKEDRTLPTNNRKLNIKDLLSQMHHYS
GGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDRDANVRLAAVQLLQFLAPKIRTEHISPFFPL
VSAHLSSAMTHITEGIQEDSLKVLDILLEHYPALITGRSSILLKNFVELISHQQLSKGLVNRDRSQSWIL
SVNPNRRVTSQQWRLKVLARLSKFLQALADGSSRLRESEGLQEQKETPHATSNSIFINWKDHANDQQQIQ
VYENGGSQPNVSSQFRLRCLGTLGTVDEDLSSPENLKGFIEIIIPLLIECWIEALPPQLAASVGSGVERE
PLQVMQQVLNVISLLWKLSKQQDETHTLESWLRKNYLTDFKHHFMSHFPYALKEITKQRKKDTNKSIKHC
TVLSNNVDHLLLNLTLSDIMVSLANASTLQNDSSWIETIRKFVTETLKGGTRLNSKQLNRLLGVSWRLIQ
MQPNRDATENLIKAVYTLYQQRGLLLPVRTLLIKFFSKIYQKEELRSYRLRYRSKVLSRWLAGLPLQLSY
LGSRNPELSTQLIDIIHTAASQANKDLLKNLQAAALRIYDPQEGAVVVLPAESQQRLVQLLYFLPTLPAD
LLSQLSRCCIMGRLGSSLAVTLIGILYMRSSFSGWSHSVNDCLMTDVDYLSFLFSTLTGFSKEELTWLQN
LRGVPHVVQTSLSPVLLYLTDLDQFLHHWDITEAVCHSLLVIPARSQSFDIMQSAISKHLVGLTVIPDST
AGCIFGVMCKLLDHTCVVNEALLPFLASCCYSLLYFLLTLEKGDAEHLKKRDKLWEVCVSILALLPRVLR
LMLQSLRVNRASPEELPVVGQLLRLLLQHVPLRSHMLTNAILVQQIIKNITTLKSGSVQEQWLTDLHYCF
SVYISGHPQGPSILNALY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH