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Report for CCDS17331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17331.1 Public Mus musculus 3 Jade1 23 108 98 CCDS HistoryNCBI Gene:269424Re-query CCDS DB by CCDS ID:17331.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026865.14 ENSMUSP00000026865.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026865.14Link to Ensembl Protein Viewer:ENSMUSP00000026865.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026865Re-query CCDS DB by Protein ID:ENSMUSP00000026865
Original member Current member EBI ENSMUST00000170711.7 ENSMUSP00000127113.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170711.7Link to Ensembl Protein Viewer:ENSMUSP00000127113.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170711Re-query CCDS DB by Protein ID:ENSMUSP00000127113
Original member Current member EBI ENSMUST00000163764.7 ENSMUSP00000128152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163764.7Link to Ensembl Protein Viewer:ENSMUSP00000128152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163764Re-query CCDS DB by Protein ID:ENSMUSP00000128152
Original member Current member EBI ENSMUST00000168086.6 ENSMUSP00000131441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168086.6Link to Ensembl Protein Viewer:ENSMUSP00000131441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168086Re-query CCDS DB by Protein ID:ENSMUSP00000131441
Original member Current member NCBI NM_001130184.1 NP_001123656.1 Accepted alive Link to Nucleotide Sequence:NM_001130184.1Link to Protein Sequence:NP_001123656.1Re-query CCDS DB by Nucleotide ID:NM_001130184Re-query CCDS DB by Protein ID:NP_001123656Link to BLAST:NP_001123656.1
Original member Current member NCBI NM_001130185.1 NP_001123657.1 Accepted alive Link to Nucleotide Sequence:NM_001130185.1Link to Protein Sequence:NP_001123657.1Re-query CCDS DB by Nucleotide ID:NM_001130185Re-query CCDS DB by Protein ID:NP_001123657Link to BLAST:NP_001123657.1
Original member Current member NCBI NM_001130186.1 NP_001123658.1 Accepted alive Link to Nucleotide Sequence:NM_001130186.1Link to Protein Sequence:NP_001123658.1Re-query CCDS DB by Nucleotide ID:NM_001130186Re-query CCDS DB by Protein ID:NP_001123658Link to BLAST:NP_001123658.1
Original member Current member NCBI NM_172303.4 NP_758507.3 Accepted alive Link to Nucleotide Sequence:NM_172303.4Link to Protein Sequence:NP_758507.3Re-query CCDS DB by Nucleotide ID:NM_172303Re-query CCDS DB by Protein ID:NP_758507Link to BLAST:NP_758507.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123656.1 834 Q6ZPI0-1 834 100% 0 0
NP_001123657.1 834 Q6ZPI0-1 834 100% 0 0
NP_001123658.1 834 Q6ZPI0-1 834 100% 0 0
NP_758507.3 834 Q6ZPI0-1 834 100% 0 0

Chromosomal Locations for CCDS 17331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 41581221 41581272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41588934 41589022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41591683 41591840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41593767 41593954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41596615 41596826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41600022 41600189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41601367 41601483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41604470 41604991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41609803 41609920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41613123 41614003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCAGCTTGTCAACGACATGGT
CCCAGCATTCTCGATCCCAGCATGGGAGGAGTAGTACCTGCTCTAGACCTGAAGATCGAAAGCCTTCTGA
GGTGTTTAGGACCGACCTGATCACTGCCATGAAGTTGCATGACTCCTACCAGCTGAACCCGGATGACTAC
TACGTGCTGGCTGATCCCTGGAGACAGGAGTGGGAGAAAGGGGTCCAGGTGCCTGTGAGCCCAGGGACCA
TCCCACAGCCTGTGGCCAGGGTTGTGTCTGAAGAGAAGTCTCTCATGTTCATCAGGCCCAAGAAGTACAT
CGCGTCGTCCGGCTCTGAGCCCCCAGCGTTAGGCTACGTCGATATCCGGACTCTGGCAGACAGTGTGTGT
CGGTATGACCTCAATGATATGGATGCTGCGTGGCTGGAAGTAACCAATGAAGAATTTAAGGAGATGGGGA
TGCCGGAGCTGGACGAGTACACCATGGAAAGGGTCTTGGAGGAATTCGAACAGCGATGCTATGACAATAT
GAATCATGCCATAGAGACAGAAGAGGGCTTGGGGATTGAATACGACGAAGACGTTGTCTGCGATGTCTGC
CAGTCACCTGATGGCGAGGACGGCAACGAGATGGTGTTCTGTGACAAGTGTAACATCTGTGTGCACCAGG
CTTGCTATGGGATCCTCAAGGTGCCAGAGGGCAGTTGGCTATGTCGTACATGTGCCCTGGGAGTTCAGCC
AAAATGTTTGCTGTGTCCCAAGAAAGGCGGAGCTATGAAGCCGACCCGCAGCGGAACCAAGTGGGTCCAC
GTCAGCTGTGCCCTGTGGATCCCTGAGGTAAGCATTGGCAGCCCTGAGAAGATGGAGCCCATCACAAAAG
TGTCTCACATTCCCAGCAGCCGGTGGGCGCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGGCCTCCAT
ACAGTGCTCTGTGAAGAACTGCCGGACAGCCTTCCACGTGACTTGTGCTTTTGACCGTGGCCTGGAGATG
AAGACCATATTGGCAGAGAATGATGAAGTCAAATTCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGA
AACCCGAGGAGGGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGCCCCTGAGAGTTCTCCCCAGAGCCC
TCTGGAGCCCTATGGTAGTCTGGAGCCGAATCGAGAGGAGGCCCACCGGGTGAGTGTTCGCAAGCAGAAG
CTACAGCAGCTGGAGGATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCGCTGCGGCTGC
CTGAGGAAGTGGTGGATTTCCTGTACCAGTACTGGAAGTTGAAGAGGAAGATCAACTTCAACAAGCCCCT
CATCACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTG
CAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGGGTTCGGAACCTCACTTACATGGTGACCCGCAGGG
AAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAAATTTTCACTCAGTACACTAAGCTCTTGGAGCA
AGAAAAAGTTTCAGGTGTGCCTTCTTCCTGCTCCTCCGCACTGGAGAACATGCTTTTTTTCAACAGTCCT
TCTGTGGGCCCCAATGCTCCCAAGATAGAGGACTTGAAATGGCATTCTGCATTCTTCAGGAAACAAATGG
GCACTTCCTTGGTTCATCCACTGAAAAAGTCCCATAAACGAGATGCAGTGCAGAATAGTTCTGGGACCGA
GGGCAAGACCTCGCATAAGCAGCCAGGTCTTTGTGGTAGAAGGGAGGGGCTGGAGGTCTCAGAAAGCTTG
CTGAGCTTAGAAAAGACTTTTGCAGAAGCACGTCTCCTATCATCAGCACAACAGAAAAATGGTGTGGTGA
CCCCAGACCATGGGAAAAGAAGAGACAATCGTTTTCATTGTGATCTCGTTAAAGGAGACTTAAAGGACAA
ATCTTTTAAGCAGAGTCACAAGCCTCTCAGGTCCACAGACACATCCCAGAGGCATCTGGACAACACAAGA
GCTGCCACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGCCCAAGTGCAATG
GCTCCCTAGTCAAAGTGCCTATAACACCTGCCAGCCCAGTGAAAAGCTGGGGAGGATTCCGGATTCCAAA
GAAGGGGGAGCGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCAT
CTGGGTGTAAGCCGAGCTCCAGCCAAGGAGAGAGCGAAGAGCAGGTTAAGAGCTGACAGTGAGAATGATG
GGTACGCCCCTGATGGGGAAATGAGTGACTCAGAGAGCGAGGCATCAGAGAAGAAATGTATCCATGCCAG
CAGCACCATCAGCAGGAGGACAGATATCATCAGGCGAAGCATCTTGGCCTCTTGA

Translation (834 aa):
MKRGRLPSSSEDSDDNGSLSTTWSQHSRSQHGRSSTCSRPEDRKPSEVFRTDLITAMKLHDSYQLNPDDY
YVLADPWRQEWEKGVQVPVSPGTIPQPVARVVSEEKSLMFIRPKKYIASSGSEPPALGYVDIRTLADSVC
RYDLNDMDAAWLEVTNEEFKEMGMPELDEYTMERVLEEFEQRCYDNMNHAIETEEGLGIEYDEDVVCDVC
QSPDGEDGNEMVFCDKCNICVHQACYGILKVPEGSWLCRTCALGVQPKCLLCPKKGGAMKPTRSGTKWVH
VSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNEKFGASIQCSVKNCRTAFHVTCAFDRGLEM
KTILAENDEVKFKSYCPKHSSHRKPEEGLGEGAAQENGAPESSPQSPLEPYGSLEPNREEAHRVSVRKQK
LQQLEDEFYTFVNLLDVARALRLPEEVVDFLYQYWKLKRKINFNKPLITPKKDEEDNLAKREQDVLFRRL
QLFTHLRQDLERVRNLTYMVTRREKIKRSVCKVQEQIFTQYTKLLEQEKVSGVPSSCSSALENMLFFNSP
SVGPNAPKIEDLKWHSAFFRKQMGTSLVHPLKKSHKRDAVQNSSGTEGKTSHKQPGLCGRREGLEVSESL
LSLEKTFAEARLLSSAQQKNGVVTPDHGKRRDNRFHCDLVKGDLKDKSFKQSHKPLRSTDTSQRHLDNTR
AATSPGVGQSAPGTRKEIVPKCNGSLVKVPITPASPVKSWGGFRIPKKGERQQQGEAHDGACHQHSDCSH
LGVSRAPAKERAKSRLRADSENDGYAPDGEMSDSESEASEKKCIHASSTISRRTDIIRRSILAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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