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Report for CCDS22413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22413.1 Public Mus musculus 8 Calr3 23 108 98 CCDS HistoryNCBI Gene:73316Re-query CCDS DB by CCDS ID:22413.1Re-query CCDS DB by GeneID:73316See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019876.11 ENSMUSP00000019876.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019876.11Link to Ensembl Protein Viewer:ENSMUSP00000019876.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019876Re-query CCDS DB by Protein ID:ENSMUSP00000019876
Original member Current member NCBI NM_028500.3 NP_082776.2 Accepted alive Link to Nucleotide Sequence:NM_028500.3Link to Protein Sequence:NP_082776.2Re-query CCDS DB by Nucleotide ID:NM_028500Re-query CCDS DB by Protein ID:NP_082776Link to BLAST:NP_082776.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082776.2 380 Q9D9Q6 380 100% 0 0

Chromosomal Locations for CCDS 22413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72424615 72424755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72425767 72425859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72427162 72427293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72428070 72428165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72431373 72431561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72434790 72434884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72438432 72438635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72443395 72443496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72443593 72443683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGTCTCGGCTCGTGCATTGCTCTGGGCCATCTGTGTGCTGCGCGTGGCACTAGCCACTGTGTACTTCC
AGGAGGAGTTTCTAGACGGAGAGCGCTGGAGGAACCGCTGGGTGCAGTCCACCAATGACTCCCAGTTTGG
GCACTTCAGAGTCTCATCGGGGAAGTTCTATGGGCATAAAGAGAAAGACAAAGGCCTGCAGACTACCCAA
AACAGCCGATTCTATGCCATCTCTGCGAGCTTCAAGCCATTCAGCAACAAAGGGAAGACCCTGGTAATCC
AGTACACGGTGAAGCATGAGCAGAAGATGGACTGTGGTGGTGGTTACATCAAGGTGTTTCCGTCTGACCT
GGACCAGAAGAAGATGAACGGAAAATCTCAGTACTACATCATGTTTGGACCTGATATTTGTGGATTTGAT
ATCAAGAAAGTTCATGTTATCTTATATTTCAAGAATCAATATCATGAAAACAAGAAGCCAATCAGATGCA
AGGTGGATGGCTTCACGCATCTCTACACCCTGATCTTAAGACCAGATCTTTCTTACGAGGTAAAAGTCGA
TGGCCAGTCCATTGAGTCTGGCAGCATTGAGTATGACTGGAACCTGACATCGCTGAGGAAAACGGAAAAG
ACATCACTGGACTCTAGGGACTGGGATCAGGTGGAAGGCAGTAAAGTCCAGGATTGGGAAAAGCACTTTC
TGGATGCGGGTGCCAGCAAGCCGAGTGACTGGAACAGTGAGCTGGATGGGGACTGGCTGCAGAAGCCACC
ATATGAGGATGGCCTGAAAGCTGAGGGCATCGACAAGGACGTGTGGCTCCACCAGAAGATGAGACCTGCT
GGCTACCTGACGCAGTATGACCTCTCAGAGTTTGAGAACATTGGCGCCATTGGTCTAGAGCTGTGGCAGG
TGAGATCTGGAACCATCTTTGATAACTTCCTGATCACAGATGATGAAGAATATGCAGAGAAGTTTGGCAA
GGCCACCTGGGGAGAAACTAAGGGTCCAGAAAAGGAGATGGATGCCATACAGGCCAAGGAAGAAGTGAAA
AAGGCCCGTGAAGAAGATGAGGAGGATCTGCTGATGGGGAAGTTTCACAGGCACAACCATTTCAGCAGAT
TCCACAGGCAGGGCGAACTATAG

Translation (380 aa):
MVSARALLWAICVLRVALATVYFQEEFLDGERWRNRWVQSTNDSQFGHFRVSSGKFYGHKEKDKGLQTTQ
NSRFYAISASFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPSDLDQKKMNGKSQYYIMFGPDICGFD
IKKVHVILYFKNQYHENKKPIRCKVDGFTHLYTLILRPDLSYEVKVDGQSIESGSIEYDWNLTSLRKTEK
TSLDSRDWDQVEGSKVQDWEKHFLDAGASKPSDWNSELDGDWLQKPPYEDGLKAEGIDKDVWLHQKMRPA
GYLTQYDLSEFENIGAIGLELWQVRSGTIFDNFLITDDEEYAEKFGKATWGETKGPEKEMDAIQAKEEVK
KAREEDEEDLLMGKFHRHNHFSRFHRQGEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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