NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30277.1 Public Mus musculus X Eif2s3x 23 108 98 CCDS HistoryNCBI Gene:26905Re-query CCDS DB by CCDS ID:30277.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050328.14 ENSMUSP00000059395.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050328.14Link to Ensembl Protein Viewer:ENSMUSP00000059395.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000050328Re-query CCDS DB by Protein ID:ENSMUSP00000059395
Original member Current member NCBI NM_012010.3 NP_036140.1 Accepted alive Link to Nucleotide Sequence:NM_012010.3Link to Protein Sequence:NP_036140.1Re-query CCDS DB by Nucleotide ID:NM_012010Re-query CCDS DB by Protein ID:NP_036140Link to BLAST:NP_036140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036140.1 472 Q9Z0N1 472 100% 0 0

Chromosomal Locations for CCDS 30277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 94190859 94190922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94196272 94196444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94197288 94197457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94199714 94199858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94200890 94200984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94202814 94202948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94203950 94204108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94205049 94205143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94209329 94209450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94209536 94209663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94211719 94211782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94212565 94212633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGCTGGGGGTGAGGGTGGAGTGACTCTCGGTCAGCCCCATCTTTCCCGACAGGATCTCGCCACATTGG
ATGTTACCAAGTTGACACCACTTTCACATGAAGTTATCAGCAGACAAGCTACAATTAATATTGGTACAAT
TGGTCACGTAGCTCATGGGAAGTCCACTGTGGTGAAGGCTATTTCTGGAGTTCACACTGTCAGATTCAAA
AATGAACTCGAAAGGAACATTACCATCAAGCTTGGATATGCTAATGCTAAGATTTATAAACTTGATGACC
CAAGTTGTCCTAGACCAGAATGTTACAGATCGTGTGGAAGCAGCACACCAGATGAGTTTCCTACAGACAT
TCCGGGGACCAAAGGGAACTTCAAGTTAGTCAGGCATGTTTCCTTTGTTGACTGTCCTGGCCATGATATT
TTGATGGCTACGATGCTGAACGGTGCAGCAGTGATGGATGCGGCCCTTCTGTTGATAGCTGGTAACGAAT
CATGCCCTCAGCCCCAGACTTCCGAACACCTGGCTGCCATAGAAATCATGAAACTCAAGCATATTTTGAT
CTTACAGAATAAAATTGATCTGGTAAAAGAAAGTCAGGCTAAGGAACAATATGAGCAAATCCTCGCATTT
GTGCAAGGAACCGTAGCAGAAGGGGCACCAATTATTCCAATTTCTGCTCAACTGAAGTACAATATTGAAG
TTGTCTGTGAGTATATAGTGAAGAAAATACCAGTGCCCCCAAGAGACTTTACTTCAGAGCCCCGTCTCAT
TGTCATCAGGTCATTTGATGTCAACAAACCTGGCTGTGAAGTCGATGACCTTAAGGGAGGTGTAGCTGGT
GGTAGTATCCTAAAAGGAGTGTTAAAGGTAGGCCAGGAGATAGAAGTGAGACCCGGTATTGTCTCCAAAG
ACAGTGAAGGAAAACTCATGTGTAAACCAATCTTTTCCAAAATTGTGTCACTTTTTGCGGAACATAATGA
TCTTCAATATGCTGCCCCGGGTGGTCTCATTGGAGTTGGAACAAAGATCGACCCCACCTTGTGCCGAGCT
GACAGAATGGTGGGACAAGTGCTCGGTGCAGTTGGAGCTTTACCTGAAATATTCACCGAACTGGAGATTT
CCTATTTCCTGCTTAGACGTCTTCTGGGTGTACGTACTGAAGGAGACAAGAAAGCAGCAAAGGTCCAAAA
GCTGTCTAAGAATGAAGTGCTTATGGTCAACATAGGCTCCCTGTCGACAGGAGGAAGAGTTAGTGCAGTC
AAGGCTGATTTGGGCAAAATTGTTTTGACCAATCCCGTGTGCACAGAAGTAGGAGAAAAAATTGCCCTTA
GCAGAAGAGTTGAGAAACACTGGCGTTTAATTGGTTGGGGTCAGATAAGAAGAGGAGTGACCATTAAGCC
AACTGTAGATGATGACTGA

Translation (472 aa):
MAGGEGGVTLGQPHLSRQDLATLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFK
NELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDI
LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQILAF
VQGTVAEGAPIIPISAQLKYNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAG
GSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRA
DRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV
KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH