NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, July 23, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49822.1 Public Mus musculus 16 Xxylt1 23 108 98 CCDS HistoryNCBI Gene:268880Re-query CCDS DB by CCDS ID:49822.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055389.8 ENSMUSP00000050246.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055389.8Link to Ensembl Protein Viewer:ENSMUSP00000050246.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055389Re-query CCDS DB by Protein ID:ENSMUSP00000050246
Original member NCBI NM_198626.2 NP_941028.2 Updated not alive Link to Nucleotide Sequence:NM_198626.2Link to Protein Sequence:NP_941028.2Re-query CCDS DB by Nucleotide ID:NM_198626Re-query CCDS DB by Protein ID:NP_941028
Current member NCBI NM_198626.3 NP_941028.2 Accepted alive Link to Nucleotide Sequence:NM_198626.3Link to Protein Sequence:NP_941028.2Re-query CCDS DB by Nucleotide ID:NM_198626Re-query CCDS DB by Protein ID:NP_941028Link to BLAST:NP_941028.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941028.2 392 Q3U4G3 392 100% 0 0

Chromosomal Locations for CCDS 49822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30957338 30957734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31007714 31007846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31050632 31050779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31080835 31081335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGGCCTCCTCCGAGGCGGAGCTGCGTGCGCTCGGGCCATGGCGCGCCTGGGCGCGTTGCGCTCGCACT
ACTGCGCGCTGCTGCTGGCCGCGGCGCTGGCGGTGTGCGCCTTCTACTACCTGGGCTCAGGCCGGGAGAC
CTTCTCCAGCGCCACCAAGAGGCTGAAGGAGGCCCGCGCCGGGGCCGCCGCGCCCACGCCGCCCGCACCC
GAGCTGGCCCGGGGCTCCGCGGCGCCGGCCTCCGGGGCCAAGGCCAAGAGCCTGGAGGGCGGCGTGGTGG
TCCCGGTGGACTACCACCTGCTGATGATGTTCACCAAGGCGGAGCACAACGCGCCGCTGCAGGCCAAGGC
TCGGGTGGCGCTGAGCTCCCTGCTGCGCCTCGCCAAATTCGAGGCGCACGAGGTGCTTAACCTCCACTTC
GTGAGCGAAGAGGCCAGCCGCGAGGTGGCCAAGGCCCTGCTGCGGGAGCTCCTGCCGCCCGCCGCCGGCT
TCAAGTGCAAGGTCATCTTCCATGATGTTGCTGTGCTGACAGATAAGCTCTTCCCCGTCGTGGAGGCCAT
GCAGAAGTACTTCAGTGCTGGCTCGGGGACCTACTACAGCGACTCCATCTTCTTCCTCTCGGTTGCCATG
CACCAGATCATGCCCAAAGAGATCCCGAGGATCATCCAGCTGGACCTTGACCTGAAGTATAAGACCAACA
TCCGAGAGCTGTTTGAGGAGTTCGACAACTTTCTGCCAGGCGCTGTTATCGGCATAGCCAGAGAGATGCA
GCCTGTGTACAGGCACACGTTCTGGCAGTTCCGCCATGAGAACCCCAAGACCAGAGTTGGGGACCCTCCG
CCTGAAGGACTCCCTGGCTTCAACAGTGGAGTGATGTTGCTGAACCTGGAGGCCATGCGCCAGTCTCCGC
TCTACAGCCATCTGCTGGAACCTTCGTGGGTACAGCAGCTTGCTGACAAGTACCACTTCCGGGGCCACCT
GGGGGACCAGGACTTCTTCACCATGATTGGCATGGAGCACCCTGAACTCTTCCATGTGCTGGACTGCACC
TGGAACCGGCAGCTGTGCACCTGGTGGAGGGACCATGGCTACAGCGATGTCTTCCAGGCATACTTCCGCT
GTGAGGGCCACGTCAAGATCTACCATGGGAACTGCAACACACCCATCCCAGAGGACTAG

Translation (392 aa):
MGLLRGGAACARAMARLGALRSHYCALLLAAALAVCAFYYLGSGRETFSSATKRLKEARAGAAAPTPPAP
ELARGSAAPASGAKAKSLEGGVVVPVDYHLLMMFTKAEHNAPLQAKARVALSSLLRLAKFEAHEVLNLHF
VSEEASREVAKALLRELLPPAAGFKCKVIFHDVAVLTDKLFPVVEAMQKYFSAGSGTYYSDSIFFLSVAM
HQIMPKEIPRIIQLDLDLKYKTNIRELFEEFDNFLPGAVIGIAREMQPVYRHTFWQFRHENPKTRVGDPP
PEGLPGFNSGVMLLNLEAMRQSPLYSHLLEPSWVQQLADKYHFRGHLGDQDFFTMIGMEHPELFHVLDCT
WNRQLCTWWRDHGYSDVFQAYFRCEGHVKIYHGNCNTPIPED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH