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Report for CCDS36303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36303.1 Public Mus musculus 11 Rapgefl1 23 108 98 CCDS HistoryNCBI Gene:268480Re-query CCDS DB by CCDS ID:36303.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107479.2 ENSMUSP00000103103.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107479.2Link to Ensembl Protein Viewer:ENSMUSP00000103103.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107479Re-query CCDS DB by Protein ID:ENSMUSP00000103103
Original member Current member NCBI NM_001080925.1 NP_001074394.1 Accepted alive Link to Nucleotide Sequence:NM_001080925.1Link to Protein Sequence:NP_001074394.1Re-query CCDS DB by Nucleotide ID:NM_001080925Re-query CCDS DB by Protein ID:NP_001074394Link to BLAST:NP_001074394.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074394.1 662 Q68EF8 662 100% 0 0

Chromosomal Locations for CCDS 36303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98837154 98837673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98840260 98840338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98842195 98842330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98842558 98842655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98845875 98845987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98846122 98846289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98847076 98847173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98847287 98847409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98849118 98849296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98849375 98849465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98849929 98849979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98850094 98850181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98850365 98850429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98850785 98850839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98851076 98851200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGAAGCCACTGGAGAAATTTTTGAAGAAGCAGACGTCTCAGCTGGCGGGGCGAGCGGTGACTGGAGGTC
CCGGCGGGGGTCCGGGTTGCTGCGGAGGGCCTGGAGGGGGTGGGGGCCCTGGTGGGGGCGGCGGTCCGGC
CGGGGGACTGCGGCCACTGCAGCGGCGTCAGAGCGTGTCTCGCCTGCTGCTCCCAGCTTTCCTCCGAGAG
CCCCCAACCGAGCCCGGGCTGGAGCCGCCCGTTGAGGAGGAAGGGGGAGAGCCATTAGGGGTCTCTGAGG
AGCCGGGCAGTGGGGGGCCCTGTTGGCTGCAGCTAGAGGAGGTTCCCGGGCCTGGGCCGATAGGATCTGG
GGTGCCCCTGCGCTCTCCTTCCTCGTACTCCTCAGATGAGCTATCCCCCGGCGAACCCCTGGCTTCACCA
CCCTGGGCCCCCCTGGGCGCCCCCGAGCGGCCAGAGCATCTTCTGAACCGGGTTCTGGAGCGCCTGGCTG
GAGGGACCACCAGGGACAGCAGCGCCTCAGATATTCTTCTTGACGACATTGTTCTTACCCATTCCCTCTT
CCTGCCAACAGAAAAGTTTCTACAAGAGCTACACCAGTACTTTGTTCAGTCAAGGAATGTGGAGGGTCCA
GAGGGGCTGGGTCGGAAGCAAGCCTGCCTTGCTCTCCTCCTCCATTTCCTGGATACCTACCAAGGACTTC
TGCAAGAGGAAGAAGGGGCCGGCCACATTATCAAGGAACTGTATCTACTAATTATGAAGGATGAGTCTCT
TTACCAGGACCTCCGAGAGGACACACTGAGGCTACACCAGCTGGTGGAGACAGTGGAGCTAAAGATTCCA
GAAGAGAGCCAGCCGCCCAGCAAGCAGGTTAAGCCGCTCTTCCGACACTTCCGCCGGATAGATTCCTGTC
TGCAGACCCGAGTGGCATTCAGGGGCTCCGATGAGATTTTCTGCCGAGTCTACATGCCTGACCACTCTTA
CGTGACCATACGCAGTCGCCTCTCGGCATCAGTGCAAGACATTCTGGGCTCTGTGACAGAGAAGCTGCAG
TACTCGGAGGAGCCTGCGGAGCGCGAGGATGCCCTCATCCTTGTAGCTGTTGCTTCCTCTGGAGAGAAGG
TCCTCCTCCAGCCAACGGAGGACTGCGTTTTCACCACGCTGGGTATCAACAGCCACCTATTTGCCTGTAC
CCGGGACAGCTACGAGGCCCTAGTACCCCTTCCGGAGGAGGTCCAGGTCTCCCCAGGAGACACAGAGATC
CACCGGGTGGAGCCTGAAGATGTGGCCAATCACCTGACTGCTTTCCACTGGGAGCTCTTCCGATGTGTGC
ACGAGTTGGAGTTCGTGGACTACGTATTCCACGGGGAGCGTGGCCGCCGAGAGACAGCCAACCTGGAGTT
GCTGCTGCAGCGTTGCAGCGAGGTCACTCACTGGGTGGCCACTGAGGTGCTGCTCTGTGAGGCCCCGGGC
AAGCGTGTACAGCTGCTTAAGAAGTTCATCAAGATCGCAGCCATCTGCAAGCAGAACCAGGACCTGCTGT
CCTTCTATGCTGTGGTCATGGGGCTGGACAATGCGGCTGTCAGCCGCCTGCGGCTCACCTGGGAGAAGCT
GCCAGGGAAATTCAAGAACCTGTTCCGTAAATTTGAGGGCTTGACGGACCCCTGCCGGAACCATAAAAGC
TACAGAGAAGTCATCTCCAAAATGAAGCCCCCTCTGATTCCGTTCGTGCCCCTGATCCTCAAAGACCTGA
CCTTCCTACATGAGGGGAGCAAGACCCTCGTAGATGGTCTGGTGAATATTGAGAAGCTGCATTCAGTGGC
CGAGAAAGTGAGGACAATCCGAAAATACCGGAGCCGGCCCCTCTGCCTGGACATGGAGGCATCCCCACAT
CACCTGCAGACCAAGGCGTACGTGCGCCAGTTCCAGGTCATCGACAACCAGAACCACCTCTTTGAGCTCT
CCTACAAGTTGGAGGCTAATAGTCAGTGA

Translation (662 aa):
MKPLEKFLKKQTSQLAGRAVTGGPGGGPGCCGGPGGGGGPGGGGGPAGGLRPLQRRQSVSRLLLPAFLRE
PPTEPGLEPPVEEEGGEPLGVSEEPGSGGPCWLQLEEVPGPGPIGSGVPLRSPSSYSSDELSPGEPLASP
PWAPLGAPERPEHLLNRVLERLAGGTTRDSSASDILLDDIVLTHSLFLPTEKFLQELHQYFVQSRNVEGP
EGLGRKQACLALLLHFLDTYQGLLQEEEGAGHIIKELYLLIMKDESLYQDLREDTLRLHQLVETVELKIP
EESQPPSKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQ
YSEEPAEREDALILVAVASSGEKVLLQPTEDCVFTTLGINSHLFACTRDSYEALVPLPEEVQVSPGDTEI
HRVEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPG
KRVQLLKKFIKIAAICKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFEGLTDPCRNHKS
YREVISKMKPPLIPFVPLILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTIRKYRSRPLCLDMEASPH
HLQTKAYVRQFQVIDNQNHLFELSYKLEANSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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