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Report for CCDS29401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29401.1 Public Mus musculus 19 Tcirg1 23 108 98 CCDS HistoryNCBI Gene:27060Re-query CCDS DB by CCDS ID:29401.1Re-query CCDS DB by GeneID:27060See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001801.10 ENSMUSP00000001801.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001801.10Link to Ensembl Protein Viewer:ENSMUSP00000001801.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001801Re-query CCDS DB by Protein ID:ENSMUSP00000001801
Original member Current member EBI ENSMUST00000126070.8 ENSMUSP00000120531.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126070.8Link to Ensembl Protein Viewer:ENSMUSP00000120531.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000126070Re-query CCDS DB by Protein ID:ENSMUSP00000120531
Original member Current member EBI ENSMUST00000145791.7 ENSMUSP00000122474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145791.7Link to Ensembl Protein Viewer:ENSMUSP00000122474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145791Re-query CCDS DB by Protein ID:ENSMUSP00000122474
Original member Current member NCBI NM_001136091.2 NP_001129563.1 Accepted alive Link to Nucleotide Sequence:NM_001136091.2Link to Protein Sequence:NP_001129563.1Re-query CCDS DB by Nucleotide ID:NM_001136091Re-query CCDS DB by Protein ID:NP_001129563Link to BLAST:NP_001129563.1
Original member Current member NCBI NM_001167784.1 NP_001161256.1 Accepted alive Link to Nucleotide Sequence:NM_001167784.1Link to Protein Sequence:NP_001161256.1Re-query CCDS DB by Nucleotide ID:NM_001167784Re-query CCDS DB by Protein ID:NP_001161256Link to BLAST:NP_001161256.1
Original member Current member NCBI NM_016921.3 NP_058617.3 Accepted alive Link to Nucleotide Sequence:NM_016921.3Link to Protein Sequence:NP_058617.3Re-query CCDS DB by Nucleotide ID:NM_016921Re-query CCDS DB by Protein ID:NP_058617Link to BLAST:NP_058617.3

Chromosomal Locations for CCDS 29401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3896114 3896192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3896270 3896447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3896604 3896721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3896795 3896902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3897038 3897169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3897468 3897681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3897758 3897876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3898548 3898638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3898718 3898875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3898980 3899119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3901891 3902035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3902344 3902556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3902631 3902724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3902882 3902964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3903046 3903172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3903340 3903428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3903509 3903729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3904217 3904295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3904585 3904701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGGCTCTATGTTCCGGAGTGAAGAGGTGGCCTTGGTCCAGCTCCTGTTGCCCACAGGGTCTGCTTACA
ACTGTGTGAGCCAGCTTGGTGAGCTGGGCCTCGTGGAGTTCAGAGACCTCAACGAATCCGTGAGCGCCTT
CCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTACCTTCTTGCGGGAA
GAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACC
TGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGC
ACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCGGTG
GCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATT
CAGACCTGAAGGTCAATTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCT
GTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTG
ACGGGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCC
GAAAGATCACAGACTGCTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGAC
CTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAAGTCCTGGGGGAGACAGACCGGTTCCTGAGC
CAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGT
ACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGC
GAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCAAGTGAGGAAGGAGTGAGTGCTGTCGCT
CACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGG
GCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTGCTCCCTACACCATCATCACATT
CCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCC
ATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAGATCTGGCAGACCTTCTTTGGGG
GTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAG
CCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAGTGAC
GAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATC
CCTTTGGCATTGACCCGATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAA
GATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGTGCAC
TTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCT
ACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTAT
CCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG
GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCT
TGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAGGATGAGGA
CACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG
GCTGGGAGCCCAGGGGATGAAGAAACTGAGTTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACA
CCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGC
CCATGCCCAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATC
GGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAG
TGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAGTTCCAGAACAAGTTCTA
TTCAGGCACCGGCTACAAGCTCAGCCCCTTCACCTTCACTGTGGACAGTGACTAG

Translation (834 aa):
MGSMFRSEEVALVQLLLPTGSAYNCVSQLGELGLVEFRDLNESVSAFQRRFVVDVRRCEELEKTFTFLRE
EVQRAGLTLAPPEGTLPAPPPRDLLRIQEETDRLAQELRDVRGNQQALRAQLHQLRLHSAVLGQSHSPPV
AADHTEGPFSETTPLLPGTRGPHSDLKVNFVAGAVEPYKAAALERLLWRACRGFLIASFRETEGQLEDPV
TGEPATWMTFVISYWGEQIGQKIRKITDCFHCHVFPYLEQEEARFRTLQQLQQQSQELQEVLGETDRFLS
QVLGRVQQLLPPWQVQIHKMKAVYLTLNQCSVNTTHKCLIAEVWCAARDLPTVQQALQSGSSEEGVSAVA
HRIPCQDMPPTLIRTNRFTSSFQGIVDAYGVGRYREVNPAPYTIITFPFLFAVMFGDVGHGLLMFLFALA
MVLTENRPAVKAAQNEIWQTFFGGRYLLLLMGLFSVYTGFIYNECFSRATTIFPSGWSVAAMANQSGWSD
EYLSQHSMLTLNPNITGVFLGPYPFGIDPIWSLATNHLSFLNSFKMKMSVILGVTHMAFGVFLSIFNHVH
FGQAHRLLLETLPELIFLLGLFGYLVFLIVYKWVNVSAASASSAPSILIHFINMFLFSQNPTNHLLFHGQ
EVVQYVLVVLALATVPILLLGTPLYLLRQHRHRRNTQRRPAGQQDEDTDKLLASPDASTLENSWSPDEEK
AGSPGDEETEFVPSEIFMHQAIHTIEFCLGCISNTASYLRLWALSLAHAQLSEVLWAMVMRIGLGMGREI
GVAAVVLVPVFAAFAVLTVAILLVMEGLSAFLHALRLHWVEFQNKFYSGTGYKLSPFTFTVDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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