NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, October 22, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19945.1 Public Mus musculus 6 Wasl 23 108 98 CCDS HistoryNCBI Gene:73178Re-query CCDS DB by CCDS ID:19945.1Re-query CCDS DB by GeneID:73178See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19945.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031695.14 ENSMUSP00000031695.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031695.14Link to Ensembl Protein Viewer:ENSMUSP00000031695.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031695Re-query CCDS DB by Protein ID:ENSMUSP00000031695
Original member Current member NCBI NM_028459.2 NP_082735.2 Accepted alive Link to Nucleotide Sequence:NM_028459.2Link to Protein Sequence:NP_082735.2Re-query CCDS DB by Nucleotide ID:NM_028459Re-query CCDS DB by Protein ID:NP_082735Link to BLAST:NP_082735.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082735.2 501 Q91YD9 501 100% 0 0

Chromosomal Locations for CCDS 19945.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24616285 24616346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24618273 24618381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24619185 24619702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24624236 24624389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24625054 24625096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24626694 24626862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24629925 24629948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24633837 24633933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24634572 24634658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24637649 24637783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24664536 24664643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGAGCTCGGGCCAGCAGCCCCCGCGGAGGGTCACCAACGTGGGCTCCCTGCTGCTCACCCCGCAAGAGA
ACGAGTCTCTCTTCTCCTTCCTCGGCAAGAAATGTGTGACTATGTCTTCAGCAGTGGTGCAGTTGTATGC
AGCAGATCGGAACTGTATGTGGGCAAAGAAGTGCAGTGGTGTCGCTTGTCTGGTTAAGGACAATCCTCAG
AGATCTTATTTTTTAAGAATATTTGACATTAAGGATGGGAAATTACTGTGGGAACAAGAGCTATACAATA
ACTTTGTATATAATAGTCCTAGAGGATATTTTCATACCTTTGCTGGAGATACTTGTCAAGTAGCTCTTAA
TTTTGCCAATGAAGAAGAAGCAAAAAAGTTCCGAAAAGCAGTTACAGACCTGTTGGGCCGACGACAAAGG
AAATCTGAAAAAAGACGAGATGCTCCAAATGGTCCCAATCTACCCATGGCTACAGTTGACATAAAAAATC
CAGAAATCACAACAAATAGATTTTATGGTTCACAAGTCAACAACATCTCCCACACCAAAGAAAAGAAGAA
AGGAAAAGCTAAAAAGAAGAGATTAACCAAGGCAGATATTGGAACACCAAGTAATTTCCAGCACATTGGG
CATGTTGGATGGGATCCAAATACAGGTTTTGATCTAAATAATTTGGATCCAGAATTAAAGAATCTTTTTG
ATATGTGTGGGATCTCTGAGGCCCAGCTTAAAGACAGAGAAACATCAAAAGTTATTTATGACTTTATTGA
AAAAACAGGAGGTGTAGAAGCTGTTAAAAACGAACTCCGAAGACAAGCACCACCACCACCTCCACCCTCG
AGAGGAGGACCTCCCCCTCCTCCTCCCCCTCCTCATAGCTCAGGTCCTCCTCCCCCTCCTGCCCGAGGAA
GGGGGGCTCCTCCTCCCCCACCTTCAAGAGCTCCTACTGCTGCACCTCCACCTCCACCTCCTTCTAGGCC
TGGTGTTGTTGTTCCTCCGCCCCCTCCAAACAGGATGTACCCTCCTCCACCACCAGCGCTGCCCTCTTCA
GCACCTTCAGGCCCTCCACCACCTCCACCTCCATCTATGGCAGGGTCCACAGCACCACCACCTCCTCCTC
CACCTCCGCCCCCACCAGGGCCACCACCTCCCCCTGGCCTGCCTTCTGATGGTGACCATCAAGTTCCAGC
TCCTTCAGGAAACAAAGCAGCTCTTTTGGATCAAATTAGAGAGGGTGCTCAGCTGAAAAAAGTGGAACAG
AATAGCCGGCCCGTGTCCTGCTCAGGAAGGGATGCGCTTTTAGACCAGATACGACAGGGCATTCAATTGA
AATCTGTGTCTGATGGCCAAGAGTCCACACCACCAACACCCGCACCCACTTCAGGAATTGTGGGTGCGCT
GATGGAAGTGATGCAGAAAAGGAGCAAAGCCATTCATTCCTCAGATGAAGATGAAGACGATGATGATGAA
GAAGATTTTGAGGATGATGATGAGTGGGAAGACTGA

Translation (501 aa):
MSSGQQPPRRVTNVGSLLLTPQENESLFSFLGKKCVTMSSAVVQLYAADRNCMWAKKCSGVACLVKDNPQ
RSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQR
KSEKRRDAPNGPNLPMATVDIKNPEITTNRFYGSQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIG
HVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPS
RGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVVVPPPPPNRMYPPPPPALPSS
APSGPPPPPPPSMAGSTAPPPPPPPPPPPGPPPPPGLPSDGDHQVPAPSGNKAALLDQIREGAQLKKVEQ
NSRPVSCSGRDALLDQIRQGIQLKSVSDGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDDDDE
EDFEDDDEWED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH