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Report for CCDS20450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20450.1 Public Mus musculus 6 Washc2 23 108 98 CCDS HistoryNCBI Gene:28006Re-query CCDS DB by CCDS ID:20450.1Re-query CCDS DB by GeneID:28006See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036759.10 ENSMUSP00000038983.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036759.10Link to Ensembl Protein Viewer:ENSMUSP00000038983.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036759Re-query CCDS DB by Protein ID:ENSMUSP00000038983
Original member Current member NCBI NM_026585.3 NP_080861.2 Accepted alive Link to Nucleotide Sequence:NM_026585.3Link to Protein Sequence:NP_080861.2Re-query CCDS DB by Nucleotide ID:NM_026585Re-query CCDS DB by Protein ID:NP_080861Link to BLAST:NP_080861.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080861.2 1334 Q6PGL7-1 1334 100% 0 0

Chromosomal Locations for CCDS 20450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116208207 116208329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116208954 116209118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116213948 116214010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116216046 116216219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116217750 116217843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116218661 116218722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116219953 116220000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116220537 116220644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116221816 116221897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116223196 116223252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116224421 116224536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116224976 116225033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116226424 116226486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116227346 116227534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116229223 116229350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116231542 116231628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116236097 116236198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116238132 116238263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116241447 116241622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116244590 116244692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116246108 116246260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116247976 116248158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116254090 116254218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116254413 116254493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116255049 116255168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116256227 116256289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116256616 116256828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116258642 116259256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116260491 116260668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116262335 116262474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4005 nt):
ATGAACCGGACGAGCCCCGACTCGGAGCGGCCTCCGGCATCCGAGCCGGTGTGGGAACGGCCCTGGTCGG
TGGAGGAGATCCGCCGCAGCAGTCAGAACTGGTCTCTGGCGGCTGACGCCGGTCTACTACAGTTTCTACA
GGAATTCTCACAGCAGACTATCTCCAGGACTCATGAAATCAAGAAGCAGGTGGATGGATTAATTCAGGAG
ACCAAAGCCACACATTGTCGTCTGCATAATGTGTTCAATGACTTCCTCATGCTGTCTAATACCCAGTTCA
TTGAGAATCGGGTGTACGATGAAGAAGTGGAGGAGCAGGTGCTCAAGGCAGAGGCCGAGAAAGCAGAGCA
GGAGAAGACCCGGGAACAGAAAGAAATAGATCTGATCCCTAAAGTGCAGGAGGCTGTGAACTACGGGTTA
CAGGTCCTGGATAGCGCGTTTGAGCAACTTGACATAAAAGCGGGGAATTCGGACTCTGAAGAGGATGATG
CCAATGAGCGGGTGGACCTGATCCTTGAACCAAAGGATCTCTACATTGACCGGCCTCTGCCCTATCTCAT
CGGGTCAAAGCTCTTCATGGAACAGGAAGATGTAGGGCTTGGAGAGCTGTCCAGTGAAGAAGGCTCTGTG
GGCAGTGACCGTGGGAGCATTGTGGACAGTGAAGACGAGAAAGAAGAGGAGGAGTCAGATGAAGATTTTG
CCAGTCATAGTGACAATGACCAAAACCAGCATACCACACAGATAAGTGATGAAGAAGAGGATGATGATGG
TGACCTCTTTGCTGACTCTGAGAAGGAGGGGGACGATATTGAGGATATTGAGGAAAGTGCTAAGTCTAAA
AGACCTACATCTTTTGCCGATGAACTGGCAGCTCGGATCAAAGGAGATATCTCAAACCAGCGGAAAGAGG
GACAAACAGATGGAAAACCTCAGAAGACAGTGAAGGAGAAGAAGGAAAGGAGAACCCCTGCAGATGATGA
AGAAGACATCTTGTTCCCACCCCCCACACTGACTGATGAAGACTTCTCACCCTTTGGCTCTAGAGGTGGT
CTCTTCAGTAACGGGCAGGGGCTTTTTGATGATGAAGATGAGAGTGACCTCTTCAAGGAAGCCCCTCGGG
CTCGGCCAGCGCAAGCTCCTGTGAGTGAAGAATTACCTCCGTCCCCTAAACCTGGAAAGAAAATCCCAGC
AGGGGCTGTTTCTGTACTTTTAGGGCATCCTGATGTGTCTGGGTCCACCTCTGCCCCATCACTGAAGGAG
CTCCAGAAACATGGGCAGCCTACTCCGGGGAAGAGCTCACATTTGCCAACTCCTGCTGGCCTCTTTGATG
ATGATGATAACGACAATGATGAAGATGATAATAACTTTTTTATGCCATCTTCTAGCAAGCCTTCTAAGAC
CGACAAAGTCAAGTCCACTGCCATTATCTTTGATGATGACGAAGGAGATCTGTTTAAAGAAAAAGCAGAA
GCTTTGCCGGCAGCTTCTGTGAGCCAGACACATGAAAGCAAAACGCGGGCAGATAAAACGATCGCCTTAC
CTTCTAGCAAAAATCTGAAGCTTGTGTCAGAAACAAAGACTCAGAAAGGTTTGTTTTCAGATGAAGAAGA
CTCTGAGGATTTGTTTTCTTCTCAAAGTTCAAGTAAGCCAAAAAGTGCATCACTTCCATCCAGCCAGCCC
CCAACATCAGTCTCCCTTTTTGGTGATGAAGATGAAGAGGACAGTCTTTTTGGGAGTGCAGCAGCTAAGA
AGCAGACTTCATCTCTACAACCTCAGAGTCAAGAGAAAGCAAAGCCTTCCGAGCAGCCCTCAAAGAAGAC
ATCTGCCTTGTTGTTCAGCAGTGATGAGGAGGACCAATGGAATATTGCTGATTCGCATACCAAGTTAGCA
TCTGACAATAAGTCCAAAGGAGAGCTGTGGGACTCGGGGGCCACCCAAGGCCAAGAAGCAAAGGCTGTGA
AAAAGACCAATCTATTTGAAGATGATGACGATGATGAAGTTGATCTGTTTGCTATTGCAAAGGACAGCCA
AAAGAAGACTCAGAGAACGTCCCTTCTCTTTGAAGACGATGCTGAGAGTGGAAGCTCTCTGTTTGGCCTT
CCTCCTACATCTGTTCCTTCTGCAACAACGAAAAAAGAGAGCGTCCCCAAGGTGCCATTGTTGTTTAGTG
ATGAGGAGGACAGTGAGGTACCATCTGGGGTGAAACCTGAGGATCTGAAGGTTGATAATGCCAGAGTGTC
CCCAGAAGTGGGGAGTGCTGATGTGGCCAGCATAGCACAGAAGGAAGGACTCTTACCAGCATCTGATCAG
GAAGCAGGTGGGCCTTCTGATATATTTTCTTCTTCATCTCCATTGGACAAAGGAGCCAAGGGTAGAACCA
GAACTGTGCTTAGTTTGTTTGATGAGGATGAGGACAAAGTAGAGGATGAAAGCAGCACCTGTGCACCACA
GGACGGACGGGAGAAGGGTCTCAAAACTGACAGCCGCCCTAAGAGCACAGGAGTCTTCCAGGATGAAGAG
CTGCTTTTCAGCCACAAGCTGCAGAAGGACAACGACCCAGATGTTGATCTTTTTGCTGGCACCAAAAAAA
TCAGGTCGTCAGTGCCAAGTGGTGGGAGCCTCTTCGGTGATGATGAAGATGATGATCTCTTCAGCTCTGC
CAAGACTCAGCCTGTGGTACCAGAAAAAAAAGGAACACTGAAAAAAGACCACCCTGTTTCTTTAAAGAAC
CAGGACCCTCTTGACTCTACTCAAGGTAGCAAAGAAAAAAGCACATGGAAAACAGAACCAGCACAGGATT
CTTCAGGTCTGACTCCATTTAAAAGCAGAGAGCCATCCAGTCGCATCGGGAAAATACAAGCAAATTTAGC
AATTAACCCAGCAGCTCTGCTGCCTACAGTGGCTCTGCAAATCCCAGGAACAAAGCCTGTTTCATCCGAA
TTAGCTTTTCCTTCATCTGAACCTGGAAGGAGCCACATCCTGGAAAGTGTGCCCACTCTTCCTGGGAGTG
TGGAGGCTGGTGTGAGTTTTGATCTTCCAGCCCAGGCAGACACCTTACACAGTGCAAACAAGAGTCGTGT
TAAAGTGAGAGGAAAGCGGAGACCTCAGACCCGTGCTGCTCGACGCCTGGCTGCCCAGGAGTCCAGTGAG
GCTGAGGATGTGACTGTAGATAGAGGACCTGTTGCTCAGTTGAGCAGTAGTCCTGTCCTACCAAACGGCC
ATCAACCTCTTCTGCAGCCCAGGATGGCCAGTGGACAGACCAGCTCTGAGACAGCCACGGCCCCACCTTG
GGAAGGTGGACCTGTTTTATCTGCAGCCGACAGAAGCTTCTTTGTAAAGTCTCGGCCTCAGACTGGAAAC
GAGGCTGACCTGTTTGATTCAGGGGACATCTTTCCCAAGAGCAGAGGATCACAGTCCGTGGAGGGAGCAG
GCGTCATGGCCGGGGAGCCCCCGTCCCACTCGTCAGGAGGGCGTAAGGAGAAGAGCCTGGCATTTCCTGA
TCTCAGTGAGGGCAGCAGCACCGAGGATCTTTTCCAGTCTGTCAAGCCGAGAGCAGCGAAGAACAGAAAC
CCTTTCCCTCTCCTTGAAGATGAGGAGGATCTCTTTGCAGATCCGAGAGGCAAAAAGAATGAGAGGAAAC
CTGACAGCCATCAAGACAGTGTGTCAAAAACTCATGACATCTTTGAGGATGATATATTTGCTACGGAAGC
AATTAAACCTTTTCCAAAAAAGAGAGAGAAGGGGAGGACTTTGGAGCCCAACTTATTTGATGATAATATT
GATATCTTCGCTGACTTAACTGTAAAACCCAAAGAAAAGTCCAAAAAGAAAGTTGCAGCCAAGTCCATGT
TTGATGATGACACAGATGACATTTTCTCCTCTGGCCTCCAGGCTAAAGCATCCAAACCCAAAAGCCAATC
TGCAGAGGCAGCATCTGAACAAAGATCTGAGCACAAAGTGGCCAGCATTTTTGATGACCCCCTGAATGCC
TTCGGAAGCCAGTAG

Translation (1334 aa):
MNRTSPDSERPPASEPVWERPWSVEEIRRSSQNWSLAADAGLLQFLQEFSQQTISRTHEIKKQVDGLIQE
TKATHCRLHNVFNDFLMLSNTQFIENRVYDEEVEEQVLKAEAEKAEQEKTREQKEIDLIPKVQEAVNYGL
QVLDSAFEQLDIKAGNSDSEEDDANERVDLILEPKDLYIDRPLPYLIGSKLFMEQEDVGLGELSSEEGSV
GSDRGSIVDSEDEKEEEESDEDFASHSDNDQNQHTTQISDEEEDDDGDLFADSEKEGDDIEDIEESAKSK
RPTSFADELAARIKGDISNQRKEGQTDGKPQKTVKEKKERRTPADDEEDILFPPPTLTDEDFSPFGSRGG
LFSNGQGLFDDEDESDLFKEAPRARPAQAPVSEELPPSPKPGKKIPAGAVSVLLGHPDVSGSTSAPSLKE
LQKHGQPTPGKSSHLPTPAGLFDDDDNDNDEDDNNFFMPSSSKPSKTDKVKSTAIIFDDDEGDLFKEKAE
ALPAASVSQTHESKTRADKTIALPSSKNLKLVSETKTQKGLFSDEEDSEDLFSSQSSSKPKSASLPSSQP
PTSVSLFGDEDEEDSLFGSAAAKKQTSSLQPQSQEKAKPSEQPSKKTSALLFSSDEEDQWNIADSHTKLA
SDNKSKGELWDSGATQGQEAKAVKKTNLFEDDDDDEVDLFAIAKDSQKKTQRTSLLFEDDAESGSSLFGL
PPTSVPSATTKKESVPKVPLLFSDEEDSEVPSGVKPEDLKVDNARVSPEVGSADVASIAQKEGLLPASDQ
EAGGPSDIFSSSSPLDKGAKGRTRTVLSLFDEDEDKVEDESSTCAPQDGREKGLKTDSRPKSTGVFQDEE
LLFSHKLQKDNDPDVDLFAGTKKIRSSVPSGGSLFGDDEDDDLFSSAKTQPVVPEKKGTLKKDHPVSLKN
QDPLDSTQGSKEKSTWKTEPAQDSSGLTPFKSREPSSRIGKIQANLAINPAALLPTVALQIPGTKPVSSE
LAFPSSEPGRSHILESVPTLPGSVEAGVSFDLPAQADTLHSANKSRVKVRGKRRPQTRAARRLAAQESSE
AEDVTVDRGPVAQLSSSPVLPNGHQPLLQPRMASGQTSSETATAPPWEGGPVLSAADRSFFVKSRPQTGN
EADLFDSGDIFPKSRGSQSVEGAGVMAGEPPSHSSGGRKEKSLAFPDLSEGSSTEDLFQSVKPRAAKNRN
PFPLLEDEEDLFADPRGKKNERKPDSHQDSVSKTHDIFEDDIFATEAIKPFPKKREKGRTLEPNLFDDNI
DIFADLTVKPKEKSKKKVAAKSMFDDDTDDIFSSGLQAKASKPKSQSAEAASEQRSEHKVASIFDDPLNA
FGSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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