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Report for CCDS24778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24778.1 Public Mus musculus 11 Cops3 23 108 98 CCDS HistoryNCBI Gene:26572Re-query CCDS DB by CCDS ID:24778.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24778.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019517.9 ENSMUSP00000019517.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019517.9Link to Ensembl Protein Viewer:ENSMUSP00000019517.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000019517Re-query CCDS DB by Protein ID:ENSMUSP00000019517
Original member NCBI NM_011991.1 NP_036121.1 Updated not alive Link to Nucleotide Sequence:NM_011991.1Link to Protein Sequence:NP_036121.1Re-query CCDS DB by Nucleotide ID:NM_011991Re-query CCDS DB by Protein ID:NP_036121
Current member NCBI NM_011991.2 NP_036121.1 Accepted alive Link to Nucleotide Sequence:NM_011991.2Link to Protein Sequence:NP_036121.1Re-query CCDS DB by Nucleotide ID:NM_011991Re-query CCDS DB by Protein ID:NP_036121Link to BLAST:NP_036121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036121.1 423 O88543 423 100% 0 0

Chromosomal Locations for CCDS 24778.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59818055 59818108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59818419 59818499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59820005 59820118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59821300 59821386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59824275 59824448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59826290 59826430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59827846 59828025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59830147 59830239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59832884 59832933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59833032 59833144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59836891 59837020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59839670 59839724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCGTCTGCTCTGGAGCAGTTCGTGAACAGTGTCCGACAGCTCTCAGCTCAAGGGCAAATGACTCAGC
TTTGTGAACTCATCAACAAGAGTGGAGAACTCCTTGCGAAGAACTTGTCCCATCTGGACACTGTGCTTGG
GGCTTTAGATGTTCAAGAACACTCTTTGGGTGTCCTTGCTGTTCTGTTTGTGAAGTTCTCAATGCCCAGT
GTTCCTGACTTCGAAACACTATTCTCACAGGTTCAGCTTTTCATCAGTACATGTAATGGCGAGCACATTC
GATATGCAACAGATACGTTTGCTGGGCTTTGCCATCAGCTAACAAATGCACTTGTGGAAAGAAAACAGCC
CCTTCGAGGAATTGGCATCCTTAAGCAAGCCATAGACAAGATGCAGATGAATACCAACCAACTGACCTCA
GTACATGCCGATCTCTGCCAGCTTTGTTTACTAGCGAAGTGCTTTAAACCTGCCCTTCCATATCTTGATG
TGGATATGATGGATATCTGTAAAGAGAATGGAGCCTATGATGCAAAACACTTTCTGTGCTACTACTATTA
TGGAGGAATGATCTATACGGGGCTGAAGAACTTTGAAAGAGCGCTGTACTTTTATGAGCAGGCTATAACT
ACTCCTGCCATGGCCGTCAGCCATATCATGTTGGAATCATATAAAAAGTATATTCTAGTGTCTTTGATAT
TACTTGGCAAAGTACAACAGCTGCCTAAATACACCTCTCAAATAGTGGGTAGATTTATTAAGCCTCTCAG
CAATGCTTACCATGAGTTAGCACAAGTTTATTCAACCAACAACCCGTCTGAGCTGCGGAACCTGGTGAGC
AAGCACAGCGAGACCTTCACTCGAGACAACAACATGGGCCTGGTGAAGCAGTGCCTGTCGTCTCTTTATA
AGAAGAACATTCAGAGGCTGACAAAGACTTTTTTAACACTATCATTACAAGATATGGCAAGCCGTGTACA
GTTATCTGGACCACAGGAGGCAGAAAAATATGTTCTACACATGATAGAAGATGGAGAAATTTTTGCAAGT
ATTAACCAGAAGGATGGAATGGTCAGTTTCCATGATAACCCTGAGAAGTATAATAACCCAGCCATGCTTC
ATAACATCGACCAAGAGATGCTAAAATGCATAGAGCTGGATGAGCGACTGAAGGCTATGGACCAGGAGAT
CACGGTGAACCCCCAGTTTGTTCAAAAGAGCATGGGCTCACAAGAAGATGACTCAGGAAACAAGCCCTCC
AGCTACTCTTGA

Translation (423 aa):
MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPS
VPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTS
VHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAIT
TPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVS
KHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFAS
INQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPS
SYS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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