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Report for CCDS18659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18659.1 Public Mus musculus 4 Ncdn 23 108 98 CCDS HistoryNCBI Gene:26562Re-query CCDS DB by CCDS ID:18659.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030637.13 ENSMUSP00000030637.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030637.13Link to Ensembl Protein Viewer:ENSMUSP00000030637.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030637Re-query CCDS DB by Protein ID:ENSMUSP00000030637
Original member Current member EBI ENSMUST00000106116.1 ENSMUSP00000101722.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106116.1Link to Ensembl Protein Viewer:ENSMUSP00000101722.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106116Re-query CCDS DB by Protein ID:ENSMUSP00000101722
Original member NCBI NM_011986.4 NP_036116.3 Updated not alive Link to Nucleotide Sequence:NM_011986.4Link to Protein Sequence:NP_036116.3Re-query CCDS DB by Nucleotide ID:NM_011986Re-query CCDS DB by Protein ID:NP_036116
Current member NCBI NM_011986.5 NP_036116.3 Accepted alive Link to Nucleotide Sequence:NM_011986.5Link to Protein Sequence:NP_036116.3Re-query CCDS DB by Nucleotide ID:NM_011986Re-query CCDS DB by Protein ID:NP_036116Link to BLAST:NP_036116.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036116.3 729 Q9Z0E0-1 729 100% 0 0

Chromosomal Locations for CCDS 18659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126744835 126745271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126746546 126746688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126747096 126747320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126748478 126748719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126749885 126750853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126751941 126752081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126752971 126753003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGTCGTGTTGTGACCTGGCTGCGGCGGGACAGTTGGGCAAGGCGGGCATCATGGCCTCGGATTGTGAGC
CAGCTCTGAACCAGGCAGAGAGCCGAAACCCCACCCTGGAGCGCTACCTGGGAGCCCTCCGTGAGGCCAA
GAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAGTAACGAAGGCAGTCAAAGCAGGTGACATTGATGCC
AAAACCCGACGTAGGATCTTTGATGCCGTTGGGTTCACCTTTCCCAACCGACTCCTGACCACTAAGGAGG
CACCTGATGGCTGCCCTGACCACGTTCTCCGGGCCCTGGGCGTGGCCCTGCTGGCCTGTTTCTGCAGCGA
CCCTGAACTAGCCAGCCATCCCCAGGTCCTGAACAAGATCCCCATCCTTAGCACATTCCTTACAGCCCGG
GGGGACCCTGATGATGCTGCCCGCCGCTCCATGATCGATGACACCTACCAGTGCCTGACAGCTGTTGCGG
GCACACCCCGAGGGCCCCGGCACCTCATTGCTGGTGGCACCGTGTCTGCCCTGTGCCAGGCGTACCTGGG
GCATGGCTACGGCTTTGACCAGGCTCTGGCACTCTTGGTGGGGCTGCTGGCTGCTGCAGAGACACAGTGC
TGGAAGGAGGCGGAGCCCGACCTGCTGGCTGTGTTGCGAGGCCTCAGTGAGGATTTCCAAAGAGCCGAAG
ATGCCAGCAAGTTTGAGCTCTGCCAGCTGCTGCCCCTTTTTCTGCCCCCAACAACTGTGCCCCCTGAATG
CCACCGAGATCTGCAGGCTGGGCTGGCACGAATCCTAGGAAGCAAGTTGAGCTCCTGGCAGCGCAACCCT
GCACTGAAGCTGGCAGCCCGCCTGGCTCATGCCTGCGGCTCCGACTGGATCCCAGTGGGCAGCTCTGGGA
GCAAGTTTCTGGCCCTGCTCGTGAATCTAGCGTGCGTGGAGGTACGGCTGGCTCTCGAGGAGACAGGCAC
AGAGGTGAAAGAAGACGTGGTAACAGCCTGCTATGCCCTTATGGAATTGGGGATCCAGGAGTGCACCCGC
TGTGAGCAGTCCCTGCTTAAGGAGCCACAGAAGGTTCAGCTCGTGAGCATTATGAAAGAGGCCATTGGCG
CTGTCATCCACTACCTGCTGCAGGTGGGGCCAGAGAAGCAGAAAGAGCCCTTTGTGTTTGCCTCGGTGCG
GATCCTGGGTGCCTGGCTGGCGGAGGAGACCTCATCCCTGCGTAAGGAGGTGTGCCAACTGCTGCCCTTC
CTTGTCCGATATGCCAAGACACTCTATGAGGAGGCTGAGGAGGCCAGTGACATTTCGCAGCAGGTGGCCA
ACTTGGCCATCTCTCCTACTACACCAGGGCCTTCATGGCCAGGGGATGCTCTCCGGCTCCTCCTTCCCGG
CTGGTGTCACCTGACTGTTGAAGATGGTCCCCGGGAGATTCTGATCAAGGAAGGAGCCCCCTCACTTCTG
TGCAAGTACTTCCTGCAGCAGTGGGAACTCACATCCCCGGGCCATGATACCTCGGTGCTGCCAGACAGCG
TGGAGATCGGCCTTCAGACCTGTTGCCACATCTTCCTCAACCTGGTGGTCACCGCTCCAGGGCTGATCAA
ACGCGATGCCTGCTTCACATCTCTTATGAACACCCTGATGACGTCACTGCCCTCACTAGTGCAGCAACAA
GGGAGACTGCTTCTAGCTGCCAACGTGGCCACTTTGGGGCTCCTAATGGCCCGGCTCCTTAGCACCTCTC
CAGCTCTCCAAGGAACCCCAGCCTCCCGAGGTTTCTTCGCAGCTGCCATCCTCTTTCTGTCACAGTCCCA
TGTGGCACGAGCCACCCCTGGCTCTGACCAGGCAGTGTTGGCCCTGTCCCCTGACTATGAAGGCATCTGG
GCTGACTTGCAAGAGCTCTGGTTCCTGGGCATGCAGGCCTTCACGGGTTGTGTGCCGCTGCTGCCCTGGC
TGGCCCCTGCCGCCCTGCGCTCCCGCTGGCCACAGGAGCTGCTACAACTGCTAGGTAGTGTAAGCCCCAA
CTCCGTCAAGCCTGAGATGGTGGCTGCCTACCAGGGCGTGCTGGTGGAATTGGCACGGGCTAACCGGCTA
TGCCGGGAGGCCATGAGGCTGCAGGCGGGTGAAGAAACGGCCAGCCATTACCGAATGGCTGCTTTGGAGC
AGTGCCTGTCAGAGCCCTGA

Translation (729 aa):
MSCCDLAAAGQLGKAGIMASDCEPALNQAESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDA
KTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELASHPQVLNKIPILSTFLTAR
GDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQC
WKEAEPDLLAVLRGLSEDFQRAEDASKFELCQLLPLFLPPTTVPPECHRDLQAGLARILGSKLSSWQRNP
ALKLAARLAHACGSDWIPVGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTR
CEQSLLKEPQKVQLVSIMKEAIGAVIHYLLQVGPEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF
LVRYAKTLYEEAEEASDISQQVANLAISPTTPGPSWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLL
CKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPSLVQQQ
GRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEGIW
ADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRL
CREAMRLQAGEETASHYRMAALEQCLSEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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