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Report for CCDS20877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20877.1 Public Mus musculus 7 Psg19 23 108 98 CCDS HistoryNCBI Gene:26439Re-query CCDS DB by CCDS ID:20877.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004657.13 ENSMUSP00000004657.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004657.13Link to Ensembl Protein Viewer:ENSMUSP00000004657.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000004657Re-query CCDS DB by Protein ID:ENSMUSP00000004657
Original member Current member NCBI NM_011964.2 NP_036094.2 Accepted alive Link to Nucleotide Sequence:NM_011964.2Link to Protein Sequence:NP_036094.2Re-query CCDS DB by Nucleotide ID:NM_011964Re-query CCDS DB by Protein ID:NP_036094Link to BLAST:NP_036094.2

Chromosomal Locations for CCDS 20877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18790051 18790334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18792420 18792779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18794033 18794392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18796804 18797163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18798254 18798317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGAGGTGTCCTCTGAGCTTCTCAGCAATGGGTGGACCTCCTGGCAGAGGGTTCTGCTCACAGCCTCCC
TCTTAACCTGCTGGTTCCTGCCCATCACTGCCCGAGTCACCATCGAATCCGTACCACCCAAATTGGTCGA
AGGAGAAAATGTTCTTCTACGAGTGGACAATCTGCCAGAGAATCTTCGAGTCTTTGCCTGGTACAGAGGG
GTAATAAAATTTAAGCTTGGAATTGCACTGTATTCACTGGACTATAACACAAGTGTGACAGGACCTGAGC
ACAGTGGTAGAGAGACATTGCACAGCAACGGGTCCCTGTGGATCCAAAGTGCCACCCGGGAAGACACAGG
ATATTACACGTTTCAAACCATAAGTAAAAATGGAAAAGTGGTATCAAATACATCCATGTTCCTTCAGGTG
TACTCCTCTCTTTTCATCTGTGGGCGCCCTTCTCCACCTGCACTCCTCACTATTGAATCAGTGCCAGCCA
GCGTTGCTGAAGGGGGAAGCGTTCTTCTCCGTGTTCACAATCTTCCAGAGCATCTTCAATCGCTTTTTTG
GTACAAAGGGTTGACTATGTTTAACAAGGTTGAGATTGCCCGGCACAGAACCGCCAAGAATTCAATTGAA
ATGGGCCCTGCCCACAGCGGTAGAGAGATAGTGTACAGCAATGGATCCCTGCTGCTCCAGAATGTCACCT
GGAAGGACATCGGATTCTACACCCTACGAACTCTGAATAGATATTCGAGAATAGAATTAGCACACATTTA
CCTTCAGGTGGACACCTCCCTTTCCTCGTGCTGTGACGCTTTCAACTCTGTCCAACTGAGGATCGATCCA
GTGCCACCACATGCTGTCGAAGGGGAAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAA
CCTTTTTGTGGTACAAAGGCGTCTATAGCACTCAGGACTTTAAAATTGCAGAATACAGCATAGTGACAGA
GTCTATCATCAGTGGCCGTGCACACAGTGGAAGAGAGATAGGGTACACCAATGGATCCCTGCTCCTCCAG
GATGTCACTGAGAAAGACTCTGGCTTCTACACACTAGTAACAATCGACAGCAATGCGAAAGTTGAAACAG
CGCATGTGCAAGTCAATGTGAACAAGCTTGTGACACAGCCTGCCATGAGAGTCACAGATAGCACAGTTCG
AGTACAGAGCTCAGTGGTCTTCACTTGCTTCTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAAC
AATCAGCGTCTGCAGCTCACAGAGAGGATGACACTGTCCCCATCAAAATGCCAACTCAGGATACATACTG
TGAGGAAGGAGGATGCTGGAGAGTATCAATGTGAGGCCTTCAACCCAGTCAGCTCAAAGACCAGTCTCCC
AGTCAGCCTGGCTGTGATGAATGAGTGA

Translation (475 aa):
MEVSSELLSNGWTSWQRVLLTASLLTCWFLPITARVTIESVPPKLVEGENVLLRVDNLPENLRVFAWYRG
VIKFKLGIALYSLDYNTSVTGPEHSGRETLHSNGSLWIQSATREDTGYYTFQTISKNGKVVSNTSMFLQV
YSSLFICGRPSPPALLTIESVPASVAEGGSVLLRVHNLPEHLQSLFWYKGLTMFNKVEIARHRTAKNSIE
MGPAHSGREIVYSNGSLLLQNVTWKDIGFYTLRTLNRYSRIELAHIYLQVDTSLSSCCDAFNSVQLRIDP
VPPHAVEGESVLLQVHNLPEDVQTFLWYKGVYSTQDFKIAEYSIVTESIISGRAHSGREIGYTNGSLLLQ
DVTEKDSGFYTLVTIDSNAKVETAHVQVNVNKLVTQPAMRVTDSTVRVQSSVVFTCFSDNTGVSIRWLFN
NQRLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVSLAVMNE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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