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Report for CCDS20878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20878.1 Public Mus musculus 7 Psg17 23 108 98 CCDS HistoryNCBI Gene:26437Re-query CCDS DB by CCDS ID:20878.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004655.7 ENSMUSP00000004655.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004655.7Link to Ensembl Protein Viewer:ENSMUSP00000004655.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004655Re-query CCDS DB by Protein ID:ENSMUSP00000004655
Original member Current member NCBI NM_007677.2 NP_031703.1 Accepted alive Link to Nucleotide Sequence:NM_007677.2Link to Protein Sequence:NP_031703.1Re-query CCDS DB by Nucleotide ID:NM_007677Re-query CCDS DB by Protein ID:NP_031703Link to BLAST:NP_031703.1

Chromosomal Locations for CCDS 20878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18814417 18814700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18816785 18817144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18818565 18818924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18819900 18820259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18821352 18821415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGAGGTGTCCTCTGAGCTTCTCAGCAATGGGTGTACCCCCTGGCAAAGGGTTCTGCTCACAGCCTCCC
TCTTATCCTGCTGCCTCCTGCCCACCACTGCCAGAGTCACTGTGGAATTCTTACCTCCCCAAGTGGTTGA
AGGAGAAAATGTTCTTCTACGCGTTGATAATCTGCCAGAGAATCTTCTAGGTTTTGTGTGGTACAAAGGG
GTGGCAAGTATGAAGCTTGGAATTGCACTGTATTCACTGCAATATAATGTAAGTGTGACAGGGCTTAAGC
ACAGCGGTAGAGAGACACTGCACAGAAATGGGTCCCTGTGGATCCAAAATGTCACCTCGGAGGACACAGG
ATATTACACCCTTCGAACCGTAAGTCAACGTGGAGAACTGGTATCAGATACATCCATATTCCTTCAGGTG
TACTCCTCTCTTTTCATCTGTGAGCGTCCTACTACCCTTGTACCTCCCACTATTGAATTAGTGCCGGCCA
GCGTTGCTGAAGGAGGAAGTGTTCTTTTCCTTGTTCACAATCTACCAGAGTATCTTATATCACTTACCTG
GTACAAAGGAGCAGTTGTGTTTAACAAGCTTGAGATTGCCCGATACAGAACAGCCAAGAATTCAAGTGTG
CTTGGCCCTGCCCACAGCGGTAGAGAAACGGTGTTCAGCAATGGATCCCTGCTGCTCCAGAATGTCACCT
GGAAAGACACCGGATTCTACACCCTACGAACTCTGAATAGATATCCGAGAATAGAATTAGCACACATTTA
CCTTCAGGTGGACACCTCCCTTTCCTCGTGCTGTCACCCTCTTGACTCTCCCCAGCTCAGTATCGATCCA
TTGCCACCGCATGCTGCTGAAGGGGGAAGGGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAA
CCTTTTCCTGGTACAAAGGCGTGTATAGCACTATATTATTTCAAATTGCAAAATATAGCATAGCAACGAA
GTCCATCATCATGGGCTATGCACGGAGTAGAAGAGAGACAGTGTATACCAATGGATCCCTGCTGCTCCAG
GATGTCACTGAGAAAGACTCTGGTGTGTACACACTAATAACAACAGACAGCAATATGGGAGTTGAAACAG
CGCATGTGCAAGTCAACGTCCACAAGCTTGCCACACAGCCTGTCATAAAAGCCACAGACAGCACAGTACG
AGTACAGGGCTCAGTGATCTTCACTTGCTTCTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAAC
AATCAGCGTCTGCAGCTCACAGAGAGGATGACCCTGTCCCCGTCAAAGTGCCAACTCTGGATACGTACTG
TGAGGAAGGAGGATGCTGGAGAGTACCAATGTGAGGCCTTCAACCCAGTCAGCTCAAAGACCAGTCTCCC
AGTCATCCTGGCTGTGATGATCGAGTGA

Translation (475 aa):
MEVSSELLSNGCTPWQRVLLTASLLSCCLLPTTARVTVEFLPPQVVEGENVLLRVDNLPENLLGFVWYKG
VASMKLGIALYSLQYNVSVTGLKHSGRETLHRNGSLWIQNVTSEDTGYYTLRTVSQRGELVSDTSIFLQV
YSSLFICERPTTLVPPTIELVPASVAEGGSVLFLVHNLPEYLISLTWYKGAVVFNKLEIARYRTAKNSSV
LGPAHSGRETVFSNGSLLLQNVTWKDTGFYTLRTLNRYPRIELAHIYLQVDTSLSSCCHPLDSPQLSIDP
LPPHAAEGGRVLLQVHNLPEDVQTFSWYKGVYSTILFQIAKYSIATKSIIMGYARSRRETVYTNGSLLLQ
DVTEKDSGVYTLITTDSNMGVETAHVQVNVHKLATQPVIKATDSTVRVQGSVIFTCFSDNTGVSIRWLFN
NQRLQLTERMTLSPSKCQLWIRTVRKEDAGEYQCEAFNPVSSKTSLPVILAVMIE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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