NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29476.1 Public Mus musculus 19 Map3k11 23 108 98 CCDS HistoryNCBI Gene:26403Re-query CCDS DB by CCDS ID:29476.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004156.9 ENSMUSP00000004156.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004156.9Link to Ensembl Protein Viewer:ENSMUSP00000004156.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004156Re-query CCDS DB by Protein ID:ENSMUSP00000004156
Original member NCBI NM_022012.3 NP_071295.2 Updated not alive Link to Nucleotide Sequence:NM_022012.3Link to Protein Sequence:NP_071295.2Re-query CCDS DB by Nucleotide ID:NM_022012Re-query CCDS DB by Protein ID:NP_071295
Current member NCBI NM_022012.4 NP_071295.2 Accepted alive Link to Nucleotide Sequence:NM_022012.4Link to Protein Sequence:NP_071295.2Re-query CCDS DB by Nucleotide ID:NM_022012Re-query CCDS DB by Protein ID:NP_071295Link to BLAST:NP_071295.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071295.2 850 Q80XI6 850 100% 0 0

Chromosomal Locations for CCDS 29476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5690247 5690988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5695161 5695341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5695497 5695645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5695732 5695907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5696007 5696250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5696684 5696797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5697344 5697479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5697558 5697649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5700590 5700970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5702007 5702344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2553 nt):
ATGGAGCCCTTGAAGAACCTCTTCCTCAAGAGCCCGCTGGGGTCATGGAACGGCAGTGGCAGTGGGGGCG
GCGGGGGTACCGGTGGAGTCCGGCCGGAGGGGTCTCCGAAGGCAACAGCAGCTTATGCCAATCCTGTCTG
GACAGCCCTGTTCGACTATGAGCCCAATGGGCAGGACGAACTAGCCCTGAGGAAGGGCGACCGTGTGGAG
GTGCTGTCCAGGGATGCAGCCATCTCAGGAGATGAGGGCTGGTGGGCGGGCCAGGTGGGTGGCCAGGTGG
GCATTTTTCCATCCAACTATGTATCTCGGGGTGGAGGCCCACCCCCCTGTGAGGTGGCCAGCTTCCAGGA
GCTGCGACTGGAGGAGGTGATCGGCATCGGTGGCTTCGGCAAGGTCTACCGTGGCAGCTGGCGAGGGGAG
CTGGTGGCTGTGAAGGCAGCCCGACAGGACCCTGATGAGGACATCAGTGTAACAGCTGAGAGTGTTCGAC
AGGAGGCCCGGCTTTTTGCCATGCTGGCCCATCCCAACATCATTGCCCTCAAAGCTGTGTGCCTGGAGGA
GCCAAACCTATGCCTGGTGATGGAGTATGCAGCTGGTGGGCCTCTTAGCCGGGCCCTGGCTGGTCGGCGT
GTGCCCCCCCATGTGCTGGTCAACTGGGCTGTGCAGATTGCCCGAGGAATGCACTACCTGCACTGTGAGG
CTCTGGTGCCTGTGATACACCGAGACCTGAAGTCCAACAACATTCTGTTGCTGCAGCCCATCGAGGGTGA
CGACATGGAACACAAGACCCTAAAGATTACTGACTTCGGCCTCGCCCGAGAGTGGCACAAAACCACCCAG
ATGAGTGCTGCGGGCACCTACGCTTGGATGGCTCCCGAGGTTATCAAGGCCTCCACCTTCTCCAAGGGCA
GCGACGTCTGGAGCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGA
CTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAG
CCCTTTGCACAACTCATGGCTGACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCC
TGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCA
GGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAGGAACTACTGAGC
CGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGC
ACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCG
AGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGA
GAACGCATCAGCATGCCCCTGGATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGA
GGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGTTGGA
ACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAG
AGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAGGAGACGGT
CCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCC
CCCGGCACTCAACGGTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACG
GAGCGAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGG
CTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGAC
AGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTC
TCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCT
CTGGCCAGCCATCAGCCAAGAGCCCTCGACGGGAAGAGACACGTGGGAGAACCGTCTCACCCCCACCAGG
AATATCACGCTCTGCTCCTGGCACACCTGGAACCCCTCGCTCACCACCGTTGGGCCTAATCAGCCGACCT
CGGCCCTCACCACTCCGTAGCCGTATTGACCCATGGAGCTTCGTGTCAGCTGGGCCACGGCCTTCACCCC
TGCCCTCTCCACAGCCTGCACCCCGACGGGCACCGTGGACCTTATTCCCAGACTCAGATCCCTTCTGGGA
CTCCCCACCTGCCAACCCCTTCCGGGGAGGCTCCCAGGACTGCAGGACGCAGACCAAAGACATGGGTGCC
CAGGCCCCATGGGCACCAGAAGCAGGGCCCTGA

Translation (850 aa):
MEPLKNLFLKSPLGSWNGSGSGGGGGTGGVRPEGSPKATAAYANPVWTALFDYEPNGQDELALRKGDRVE
VLSRDAAISGDEGWWAGQVGGQVGIFPSNYVSRGGGPPPCEVASFQELRLEEVIGIGGFGKVYRGSWRGE
LVAVKAARQDPDEDISVTAESVRQEARLFAMLAHPNIIALKAVCLEEPNLCLVMEYAAGGPLSRALAGRR
VPPHVLVNWAVQIARGMHYLHCEALVPVIHRDLKSNNILLLQPIEGDDMEHKTLKITDFGLAREWHKTTQ
MSAAGTYAWMAPEVIKASTFSKGSDVWSFGVLLWELLTGEVPYRGIDCLAVAYGVAVNKLTLPIPSTCPE
PFAQLMADCWAQDPHRRPDFASILQQLEALEAQVLREMPRDSFHSMQEGWKREIQGLFDELRAKEKELLS
REEELTRAAREQRSQAEQLRRREHLLAQWELEVFERELTLLLQQVDRERPHVRRRRGTFKRSKLRARDGG
ERISMPLDFKHRITVQASPGLDRRRNVFEVGAGDSPTFPRFRAIQLEPTESGQTWGRQSPRRLEDSSNGE
RRACWAWGPSSPKPGEAQNGRRRSRMDEATWYLDSDDSSPLGSPSTPPALNGNPPRPSPEPEEPRRAGPT
ERGNSSGTPKLIQRALLRGTALLASLGLGRDLQPPGGLSRERGESPTAPPPAQMPSPCPPELPSTPLIRL
SQTTPDAHSSPTPGPLLLDLGVPSGQPSAKSPRREETRGRTVSPPPGISRSAPGTPGTPRSPPLGLISRP
RPSPLRSRIDPWSFVSAGPRPSPLPSPQPAPRRAPWTLFPDSDPFWDSPPANPFRGGSQDCRTQTKDMGA
QAPWAPEAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH