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Report for CCDS37537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37537.1 Public Mus musculus 17 Fgd2 23 108 98 CCDS HistoryNCBI Gene:26382Re-query CCDS DB by CCDS ID:37537.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024810.7 ENSMUSP00000024810.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024810.7Link to Ensembl Protein Viewer:ENSMUSP00000024810.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024810Re-query CCDS DB by Protein ID:ENSMUSP00000024810
Original member Current member NCBI NM_013710.4 NP_038738.2 Accepted alive Link to Nucleotide Sequence:NM_013710.4Link to Protein Sequence:NP_038738.2Re-query CCDS DB by Nucleotide ID:NM_013710Re-query CCDS DB by Protein ID:NP_038738Link to BLAST:NP_038738.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038738.2 655 Q8BY35 655 100% 0 0

Chromosomal Locations for CCDS 37537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29361093 29361157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29363711 29363942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29364911 29364991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29365462 29365610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29366971 29367127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29367271 29367409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29367921 29367979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29368184 29368330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29369245 29369337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29373218 29373297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29373384 29373414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29374011 29374103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29374847 29374978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29376828 29376974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29378313 29378459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29378845 29379060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGAGCGAGCCTGTGAGAAGCAGGACTCAGTGTGCAACCTGGTGGCTGTGTTTGAGAACAACAGGACTC
CGGGAGAAGCACCTGGATCCCATAGCCTTGAGGACCAGCCCCATAGCCCTGAACACCAGCTGTCCCTGTC
CCCAGAGCCTTGGGAGGCACCCCCTGTCAAGGAGGCCTTGAAGTCTGAATTCCGGCCAGTGAGCAGGACA
TATCTGAGTTCCCTCAAGAACAAGTTATCGAGTGGGGCTTGGAGGAGATCCTGTCAGCCTGGGGTCAGCC
CGGGGCCAGAGACACAGGAACCTGAGGAGAAGAGGGTCGTGCGAGAGCTTCTGGAGACGGAGCAGGCCTA
TGTGGCTCGCCTGCACCTGCTTGACCAGGTGTTCTTCCAGGAGCTGCTGAGGGAGGCAGGCCGCAGCAAG
GCCTTCCCTGAGGACGTGGTGAAGCTCATTTTCTCCAACATCTCCTCCATCTATCGTTTCCACGCCCAGT
TCTTCCTTCCCGAGCTGCAGCGGCGCGTGGATGACTGGGCAGCCACGCCCCGCATTGGGGATGTGATCCA
GAAGCTGGCCCCGTTTCTGAAAATGTACAGCGAGTACGTGAAGAACTTTGAGCGGGCCGCGGAACTGCTG
GCCACGTGGATGGACAAGTCTCAGCCCTTCCAGGAGGTGGTCACCCGCATCCAGTGCAGCGAGGCCTCCA
GCAGCCTGACCCTGCAGCACCACATGTTGGAGCCTGTGCAAAGAATCCCGCGGTACGAACTGCTGCTCAA
GGAATATGTGCAGAAGCTGCCAGCCCAGGCCCCAGACCTCGAAGATGCCCAGAGAGCACTGGACATGATC
TTCTCAGCTGCACAGCACTCCAATGCAGCCATTGCAGAGATGGAGCGGCTGCAGGGCCTGTGGGATGTGT
ACCAGCGCCTGGGCTTGGAGGATGACATCGTGGACCCCTCCAACACCCTGCTCCGAGAGGGCCCTGTTCT
CAAGATCTCTTTCCGCCGCAGCGACCCAATGGAACGCTACCTGGTTTTGTTCAACAACATGCTTCTGTAT
TGTGTACCCCGAGTCCTCCAAGTGGGTGCCCAGTTCCAGGTGCGGACTCGCATCGATGTGGCCGGCATGA
AGGTGCGGGAGCTGACCGATGCTGAGTTCCCACACTCCTTCCTGGTGTCCGGAAAGCAGCGCACACTGGA
GCTGCAGGCCCGGTCCCGAGATGAAATGGTTTCCTGGATGCAGGCCTGCCAGGCAGCCATTGACCAGGTT
GAGAAGCGGAGTGAGACCTTCAAGGCTGCTGTCCAGGGACCTCAGGGGGACACGCAGGAGCCCAAGCCAC
AGGTAGAGGAGCTGGGTCTCCGAGCGCCTCAGTGGGTCCGGGACAAGATGGTGACCATGTGCATGCGCTG
CCAGGAGCCCTTCAATGCCCTGACTCGTCGGCGCCACCACTGCCGGGCTTGCGGCTATGTAGTGTGTGCC
AAGTGCTCTGACTACCGTGCGGAGCTGAAATATGACAGCAACAGGCCCAACCGAGTCTGCCTGACCTGCT
ACACATTTCTCACTGGAAACGTACTCCCTCAAGGCAAGGAGGACAAGAGGCGGGGCATCTTGGAGAAAGA
GGCCTCAGCAGCACCCGAGCAGAGTCTGGTGTGCAGCTTCCTGCAGCTCATAGGGGACAAGTGCAGCAGG
AGCCTTCCCCGGAGCTGGTGTGTGATCCCCCGGGATGACCCCCTTGTCCTGTATGTCTATGCAGCCCCCC
AGGACACAAAGGCTCACACCTCCATCCCCCTACTGGGCTATCAGGTGATTTCAGGGCCCCAGGGGGACCC
TCGGGTTTTCCAGCTGCAACAGTCAGGCCAGCAGTACACCTTCAAGGCCGAGTCTGTGGAGCTGCAGGGC
CGCTGGGTGACAGCTATCAAGCGTGCGGCCAGTGGCCGGACCCCTGAGGGACCTGACGAAGAAGATGTGT
CTGACTGA

Translation (655 aa):
MERACEKQDSVCNLVAVFENNRTPGEAPGSHSLEDQPHSPEHQLSLSPEPWEAPPVKEALKSEFRPVSRT
YLSSLKNKLSSGAWRRSCQPGVSPGPETQEPEEKRVVRELLETEQAYVARLHLLDQVFFQELLREAGRSK
AFPEDVVKLIFSNISSIYRFHAQFFLPELQRRVDDWAATPRIGDVIQKLAPFLKMYSEYVKNFERAAELL
ATWMDKSQPFQEVVTRIQCSEASSSLTLQHHMLEPVQRIPRYELLLKEYVQKLPAQAPDLEDAQRALDMI
FSAAQHSNAAIAEMERLQGLWDVYQRLGLEDDIVDPSNTLLREGPVLKISFRRSDPMERYLVLFNNMLLY
CVPRVLQVGAQFQVRTRIDVAGMKVRELTDAEFPHSFLVSGKQRTLELQARSRDEMVSWMQACQAAIDQV
EKRSETFKAAVQGPQGDTQEPKPQVEELGLRAPQWVRDKMVTMCMRCQEPFNALTRRRHHCRACGYVVCA
KCSDYRAELKYDSNRPNRVCLTCYTFLTGNVLPQGKEDKRRGILEKEASAAPEQSLVCSFLQLIGDKCSR
SLPRSWCVIPRDDPLVLYVYAAPQDTKAHTSIPLLGYQVISGPQGDPRVFQLQQSGQQYTFKAESVELQG
RWVTAIKRAASGRTPEGPDEEDVSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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