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Report for CCDS54442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54442.1 Public Homo sapiens 2 NEU4 24 110 108 CCDS HistoryNCBI Gene:129807Re-query CCDS DB by CCDS ID:54442.1Re-query CCDS DB by GeneID:129807See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54442.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391969.6 ENSP00000375830.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391969.6Link to Ensembl Protein Viewer:ENSP00000375830.2Re-query CCDS DB by Nucleotide ID:ENST00000391969Re-query CCDS DB by Protein ID:ENSP00000375830
Original member Current member EBI ENST00000405370.5 ENSP00000384804.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405370.5Link to Ensembl Protein Viewer:ENSP00000384804.1Re-query CCDS DB by Nucleotide ID:ENST00000405370Re-query CCDS DB by Protein ID:ENSP00000384804
Original member Current member EBI ENST00000407683.6 ENSP00000385402.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407683.6Link to Ensembl Protein Viewer:ENSP00000385402.1Re-query CCDS DB by Nucleotide ID:ENST00000407683Re-query CCDS DB by Protein ID:ENSP00000385402
Original member Current member NCBI NM_001167600.3 NP_001161072.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001167600.3Link to Protein Sequence:NP_001161072.1Re-query CCDS DB by Nucleotide ID:NM_001167600Re-query CCDS DB by Protein ID:NP_001161072Link to BLAST:NP_001161072.1
Original member Current member NCBI NM_001167601.3 NP_001161073.1 Accepted alive Link to Nucleotide Sequence:NM_001167601.3Link to Protein Sequence:NP_001161073.1Re-query CCDS DB by Nucleotide ID:NM_001167601Re-query CCDS DB by Protein ID:NP_001161073Link to BLAST:NP_001161073.1
Original member Current member NCBI NM_001167602.3 NP_001161074.1 Accepted alive Link to Nucleotide Sequence:NM_001167602.3Link to Protein Sequence:NP_001161074.1Re-query CCDS DB by Nucleotide ID:NM_001167602Re-query CCDS DB by Protein ID:NP_001161074Link to BLAST:NP_001161074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161072.1 484 Q8WWR8-1 484 100% 0 0
NP_001161073.1 484 Q8WWR8-1 484 100% 0 0
NP_001161074.1 484 Q8WWR8-1 484 100% 0 0

Chromosomal Locations for CCDS 54442.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 241814485 241814685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241814892 241815147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241816051 241817048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGGGGTCCCTCGTACCCCTTCACGGACAGTGCTCTTCGAGCGGGAGAGGACGGGCCTGACCTACCGCG
TGCCCTCGCTGCTCCCCGTGCCCCCCGGGCCCACCCTGCTGGCCTTTGTGGAGCAGCGGCTCAGCCCTGA
CGACTCCCACGCCCACCGCCTGGTGCTGAGGAGGGGCACGCTGGCCGGGGGCTCCGTGCGGTGGGGTGCC
CTGCACGTGCTGGGGACAGCAGCCCTGGCGGAGCACCGGTCCATGAACCCCTGCCCTGTGCACGATGCTG
GCACGGGCACCGTCTTCCTCTTCTTCATCGCGGTGCTGGGCCACACGCCTGAGGCCGTGCAGATCGCCAC
GGGAAGGAACGCCGCGCGCCTCTGCTGTGTGGCCAGCCGTGACGCCGGCCTCTCGTGGGGCAGCGCCCGG
GACCTCACCGAGGAGGCCATCGGTGGTGCCGTGCAGGACTGGGCCACATTCGCTGTGGGTCCCGGCCACG
GTGTGCAGCTGCCCTCAGGCCGCCTGCTGGTACCCGCCTACACCTACCGCGTGGACCGCCGAGAGTGTTT
TGGCAAGATCTGCCGGACCAGCCCTCACTCCTTCGCCTTCTACAGCGATGACCACGGCCGCACCTGGCGC
TGTGGAGGCCTCGTGCCCAACCTGCGCTCAGGCGAGTGCCAGCTGGCAGCGGTGGACGGTGGGCAGGCCG
GCAGCTTCCTCTACTGCAATGCCCGGAGCCCACTGGGCAGCCGTGTGCAGGCGCTCAGCACTGACGAGGG
CACCTCCTTCCTGCCCGCAGAGCGCGTGGCTTCCCTGCCCGAGACTGCCTGGGGCTGCCAGGGCAGCATC
GTGGGCTTCCCAGCCCCCGCCCCCAACAGGCCACGGGATGACAGTTGGTCAGTGGGCCCCGGGAGTCCCC
TCCAGCCTCCACTCCTCGGTCCTGGAGTCCACGAACCCCCAGAGGAGGCTGCTGTAGACCCCCGTGGAGG
CCAGGTGCCTGGTGGGCCCTTCAGCCGTCTGCAGCCTCGGGGGGATGGCCCCAGGCAGCCTGGCCCCAGG
CCTGGGGTCAGTGGGGATGTGGGGTCCTGGACCCTGGCACTCCCCATGCCCTTTGCTGCCCCGCCCCAGA
GCCCCACGTGGCTGCTGTACTCCCACCCAGTGGGGCGCAGGGCTCGGCTACACATGGGTATCCGCCTGAG
CCAGTCCCCGCTGGACCCGCGCAGCTGGACAGAGCCCTGGGTGATCTACGAGGGCCCCAGCGGCTACTCC
GACCTGGCGTCCATCGGGCCGGCCCCTGAGGGGGGCCTGGTTTTTGCCTGCCTGTACGAGAGCGGGGCCA
GGACCTCCTATGATGAGATTTCCTTTTGTACATTCTCCCTGCGTGAGGTCCTGGAGAACGTGCCCGCCAG
CCCCAAACCGCCCAACCTTGGGGACAAGCCTCGGGGGTGCTGCTGGCCCTCCTGA

Translation (484 aa):
MGVPRTPSRTVLFERERTGLTYRVPSLLPVPPGPTLLAFVEQRLSPDDSHAHRLVLRRGTLAGGSVRWGA
LHVLGTAALAEHRSMNPCPVHDAGTGTVFLFFIAVLGHTPEAVQIATGRNAARLCCVASRDAGLSWGSAR
DLTEEAIGGAVQDWATFAVGPGHGVQLPSGRLLVPAYTYRVDRRECFGKICRTSPHSFAFYSDDHGRTWR
CGGLVPNLRSGECQLAAVDGGQAGSFLYCNARSPLGSRVQALSTDEGTSFLPAERVASLPETAWGCQGSI
VGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPR
PGVSGDVGSWTLALPMPFAAPPQSPTWLLYSHPVGRRARLHMGIRLSQSPLDPRSWTEPWVIYEGPSGYS
DLASIGPAPEGGLVFACLYESGARTSYDEISFCTFSLREVLENVPASPKPPNLGDKPRGCCWPS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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