NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5041.1 Public Homo sapiens 6 FBXL4 24 110 108 CCDS HistoryNCBI Gene:26235Re-query CCDS DB by CCDS ID:5041.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5041.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229971.2 ENSP00000229971.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000229971.2Link to Ensembl Protein Viewer:ENSP00000229971.1Re-query CCDS DB by Nucleotide ID:ENST00000229971Re-query CCDS DB by Protein ID:ENSP00000229971
Original member Current member EBI ENST00000369244.7 ENSP00000358247.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369244.7Link to Ensembl Protein Viewer:ENSP00000358247.1Re-query CCDS DB by Nucleotide ID:ENST00000369244Re-query CCDS DB by Protein ID:ENSP00000358247
Original member Current member NCBI NM_001278716.2 NP_001265645.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278716.2Link to Protein Sequence:NP_001265645.1Re-query CCDS DB by Nucleotide ID:NM_001278716Re-query CCDS DB by Protein ID:NP_001265645Link to BLAST:NP_001265645.1
Original member Current member NCBI NM_012160.5 NP_036292.2 Accepted alive Link to Nucleotide Sequence:NM_012160.5Link to Protein Sequence:NP_036292.2Re-query CCDS DB by Nucleotide ID:NM_012160Re-query CCDS DB by Protein ID:NP_036292Link to BLAST:NP_036292.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265645.1 621 Q9UKA2 621 100% 0 0
NP_036292.2 621 Q9UKA2 621 100% 0 0

Chromosomal Locations for CCDS 5041.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 98874278 98874441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98875415 98875727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98880553 98880624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98899268 98899481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98905426 98905670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98917374 98917719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 98926477 98926988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCGGCGCCGAGCCA
GGACAGCTACAAGAGGAGAAATGATGAACACCCATAGAGCTATAGAATCAAACAGCCAGACTTCCCCTCT
CAATGCAGAGGTAGTCCAGTATGCCAAAGAAGTAGTGGATTTCAGTTCCCATTATGGAAGTGAGAATAGT
ATGTCCTATACTATGTGGAATTTGGCTGGTGTACCAAATGTATTCCCAAGTTCTGGTGACTTTACTCAGA
CAGCTGTGTTTCGAACTTATGGGACATGGTGGGATCAGTGTCCTAGTGCTTCCTTGCCATTCAAGAGGAC
GCCACCTAATTTTCAGAGCCAGGACTATGTGGAACTTACTTTTGAACAACAGGTGTATCCTACAGCTGTA
CATGTTCTAGAAACCTATCATCCCGGAGCAGTCATTAGAATTCTCGCTTGTTCTGCAAATCCTTATTCCC
CAAATCCACCAGCTGAAGTAAGATGGGAGATTCTTTGGTCAGAGAGACCTACGAAGGTGAATGCTTCCCA
AGCTCGCCAGTTTAAACCTTGTATTAAGCAGATAAATTTCCCCACAAATCTTATACGACTGGAAGTAAAT
AGTTCTCTTCTGGAATATTACACTGAATTAGATGCAGTTGTGCTACATGGTGTGAAGGACAAGCCAGTGC
TTTCTCTCAAGACTTCACTTATTGACATGAATGATATAGAAGATGATGCCTATGCAGAAAAGGATGGTTG
TGGAATGGACAGTCTTAACAAAAAGTTTAGCAGTGCTGTCCTCGGGGAAGGGCCAAATAATGGGTATTTT
GATAAACTACCTTATGAGCTTATTCAGCTGATTCTGAATCATCTTACACTACCAGACCTGTGTAGATTAG
CACAGACTTGCAAACTACTGAGCCAGCATTGCTGTGATCCTCTGCAATACATCCACCTCAATCTGCAACC
ATACTGGGCAAAACTAGATGACACTTCTCTGGAATTTCTACAGTCTCGCTGCACTCTTGTCCAGTGGCTT
AATTTATCTTGGACTGGCAATAGAGGCTTCATCTCTGTTGCAGGATTTAGCAGGTTTCTGAAGGTTTGTG
GATCCGAATTAGTACGCCTTGAATTGTCTTGCAGCCACTTTCTTAATGAAACTTGCTTAGAAGTTATTTC
TGAGATGTGTCCAAATCTACAGGCCTTAAATCTCTCCTCCTGTGATAAGCTACCACCTCAAGCTTTCAAC
CACATTGCCAAGTTATGCAGCCTTAAACGACTTGTTCTCTATCGAACAAAAGTAGAGCAAACAGCACTGC
TCAGCATTTTGAACTTCTGTTCAGAGCTTCAGCACCTCAGTTTAGGCAGTTGTGTCATGATTGAAGACTA
TGATGTGATAGCTAGCATGATAGGAGCCAAGTGTAAAAAACTCCGGACCCTGGATCTGTGGAGATGTAAG
AATATTACTGAGAATGGAATAGCAGAACTGGCTTCTGGGTGTCCACTACTGGAGGAGCTTGACCTTGGCT
GGTGCCCAACTCTGCAGAGCAGCACCGGGTGCTTCACCAGACTGGCACACCAGCTCCCAAACTTGCAAAA
ACTCTTTCTTACAGCTAATAGATCTGTGTGTGACACAGACATTGATGAATTGGCATGTAATTGTACCAGG
TTACAGCAGCTGGACATATTAGGAACAAGAATGGTAAGTCCGGCATCCTTAAGAAAACTCCTGGAATCTT
GTAAAGATCTTTCTTTACTTGATGTGTCCTTCTGTTCGCAGATTGATAACAGAGCTGTGCTAGAACTGAA
TGCAAGCTTTCCAAAAGTGTTCATAAAAAAGAGCTTTACTCAGTGA

Translation (621 aa):
MSPVFPMLTVLTMFYYICLRRRARTATRGEMMNTHRAIESNSQTSPLNAEVVQYAKEVVDFSSHYGSENS
MSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPNFQSQDYVELTFEQQVYPTAV
HVLETYHPGAVIRILACSANPYSPNPPAEVRWEILWSERPTKVNASQARQFKPCIKQINFPTNLIRLEVN
SSLLEYYTELDAVVLHGVKDKPVLSLKTSLIDMNDIEDDAYAEKDGCGMDSLNKKFSSAVLGEGPNNGYF
DKLPYELIQLILNHLTLPDLCRLAQTCKLLSQHCCDPLQYIHLNLQPYWAKLDDTSLEFLQSRCTLVQWL
NLSWTGNRGFISVAGFSRFLKVCGSELVRLELSCSHFLNETCLEVISEMCPNLQALNLSSCDKLPPQAFN
HIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKKLRTLDLWRCK
NITENGIAELASGCPLLEELDLGWCPTLQSSTGCFTRLAHQLPNLQKLFLTANRSVCDTDIDELACNCTR
LQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDNRAVLELNASFPKVFIKKSFTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH