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Report for CCDS24364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24364.1 Public Mus musculus 11 Inpp5j 23 108 98 CCDS HistoryNCBI Gene:170835Re-query CCDS DB by CCDS ID:24364.1Re-query CCDS DB by GeneID:170835See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24364.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044507.11 ENSMUSP00000046625.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044507.11Link to Ensembl Protein Viewer:ENSMUSP00000046625.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044507Re-query CCDS DB by Protein ID:ENSMUSP00000046625
Original member Current member NCBI NM_172439.3 NP_766027.2 Accepted alive Link to Nucleotide Sequence:NM_172439.3Link to Protein Sequence:NP_766027.2Re-query CCDS DB by Nucleotide ID:NM_172439Re-query CCDS DB by Protein ID:NP_766027Link to BLAST:NP_766027.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766027.2 1003 P59644 1003 100% 0 0

Chromosomal Locations for CCDS 24364.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3494660 3495166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3495347 3495451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3495560 3495637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3495785 3495922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3499597 3499780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3499891 3500000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3500138 3500249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3500574 3500749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3501046 3501162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3501320 3501428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3501525 3501638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3501987 3503143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3504644 3504748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3012 nt):
ATGGAAGGCCAGACCAGGAGTGGTAGTGCCAGGCCCGGGACCAGGACTGGACTGGGACCCTTGCCTGGGA
CTCATGGGGTCTTGCAAGCTGAGATACCCTCGAAGAAGGTAAACTCAAGTTTTCAGCTTCCAGCAAAGAA
CTCGGGCCCAGCATCTTCGGAACCAAGGTTGACCCTGGCACCTGTGGGACCACGAGCAGCTGTGTCACCT
CCTTCAGAGAGGCCGAGACTGGTTTTGTCATCTCCCCGACCTGTCCTAGCGCCACTGTCCATCGCTGGAG
AACAGAAAAGGCCTCCGCCCCCTCACAGCTCCAACAGGGCAGCCAAGTCTGTGGGCCAACTGGTAGTATC
TGCTGCTGCAGCATCCAAGCCTCCACCAGTCGCCTCAGTCTCAATCCTGGCTCCGAAGTCTCTGGGGCAG
CTAGTAATATCTGCCTCTGCTATGCCAAGGCCATCTCCGGCTCCCCTGGGGTCCGTCCTAACTCCAACTT
CTAGGGATCAGAAGCAGTTATCACCCACCTCTGTGGGACCTAAGCCAGCATTGGCAACCTCAGGCCTAAG
CCTAGCGCTGGCCTCTCAGGAGCAGCCCCCGCAGTCCCCCTCCAGTCCTTCCCCTGTGCCGAGTCCCGTT
CTGTCACCCTCTCAGGAGGGTCACCTGGCTGCAGCATCTGTGACATCTACCCCAGCTTCTGAGAGACAGT
TGCCGGCTAGACAGAAGGATACCGCAGTTCCCAGGCCCACTCCTCCTGCAGACAAGTGTCTCTACACTCC
AGAGCGGGCAGCTGGTCCCGCCACCTCTCCACCAAGGGCCCAAGCTTTCTCAGACCCTCGGCTTTCCCCC
TCTTTCCGCGCGAGACCAGAGGCTCCACGCCACAGCCCAGAGGATCCCGTCTTGCCGCCGCCACCGCAGA
CCCTGCCCTTGGATGTGAGCCCAGGCCTTCCAGAGTCTGGCACCCGTTCCCCTGGACTTCTGTCCCCTAC
CTTTCGGCCAGGAATCCCTTCAAGCCAGACTGTGCCCCCACCTCTGCCAAAGCCACCTCGGTCTCCCAGC
CGCTCCCCGAGTCGCTCTCCCAACCGCTCTCCCTGTTTGCCCCCAGCCCCTGAGGTGGCACTCCCAAAAC
CTGTCACCCAGGCTGCAGGGTCTGGCAGGTGCCCAAGCCCTAACCTACAGGCACAAGAAAGTCCAGCAGC
CGCCACCACCACCACCTCACCAACATCTTCTTGGTCAGCTCAGCCTACTTGCAAGAGCGACCCTGGATTC
CGGATCACTGTGGTTACATGGAATGTGGGGACCGCCATGCCCCCTGATGATGTCACATCTCTTCTTCACC
TGGGCAGTGGCCACGACAATGATGGTGCAGATATGATTGCCATAGGGTTGCAAGAAGTCAATTCCATGAT
CAACAAGCGGCTCAAGGATGCTCTCTTTACTGACCAGTGGAGTGAGCTCTTCATGGATGCACTGGGGCCT
TTCAACTTTGTGCTGGTGAGCACCGTGAGGATGCAGGGCGTCATTCTGCTGCTCTTTGCCAAGTACTACC
ACCTACCGTTCCTACGGGACGTGCAGACAGACTGTACTCGTACTGGCCTGGGTGGCTACTGGGGTAACAA
GGGCGGAGTAAGTGTGCGCTTAGCAGCCTTCGGGCACATGCTGTGCTTCCTAAACTGCCACTTGCCCGCA
CACATGGACAAGGCAGAACAGCGCAAGGATAACTTTCAAACTATCCTTAGCCTCCAGCAATTCCAGGGAC
CTGGTGCACACGGCATCTTGGATCATGATCTTGTATTCTGGTTTGGGGACCTGAACTTCCGCATTGAGAG
CTATGACCTACACTTTGTCAAGTTCGCCATAGACAGCAACCAACTCCATCAGCTCTGGGAGAAGGACCAG
CTCAACATGGCCAAGAACACTTGGCCCATCTTGAAAGGTTTCCAGGAAGGGCCCCTTAACTTTGCTCCCA
CTTTCAAGTTTGACGTGGGTACCAACAAATATGATACCAGTGCCAAAAAGCGGAAGCCAGCCTGGACAGA
TCGCATTCTGTGGAAGGTCAAGGCTCCAAGTGGAGGTCCCAGTCCCTCAGGACGAGAGAGTCATAGGCTC
CAGGTGACCCAGCACAGCTACCGCAGCCACATGGAGTACACTGTCAGTGACCACAAGCCTGTTGCTGCCC
AGTTCATTCTGCAGTTTGCCTTCAGGGATGATGTTCCTCTGGTGCGGCTGGAGGTAGCCGATGAATGGGC
AAGGCCAGAGCAGGCCGTGGTGAGGTACCGCGTGGAAACAGTATTTGCCCGAAGCTCCTGGGACTGGATC
GGCTTGTACCGGGTGGGCTTCCGTCACTGTAAGGACTATGTGGCTTACGTCTGGGCCAAGCATGAGGAAG
TGGATGGGAATATCTACCAGGTGACCTTCAGTGAGGAGTCACTGCCCAAGGGCCACGGAGACTTCATTCT
GGGTTACTATAGCCACCACCACAGCATCCTCATTGGCGTCACAGAACCCTTTCAGATCTCGCTGCCTACC
TCAGAATCTGCCAGCAGCAGCACAGACAGCTCGGGCACCAGCTCGGAGGGGGAGGATGACAGCACTCTGG
AGCTGCTGGCACCCAAGTCCCGCAGCCCCAGCCCTGGCAAGTCCAAGAGACACCGTAGTCGCAGCCCTGG
CCTAGCCCGCTTCCCCAGTCTCGCTCTCCATCCCTCGTCCCGTGAACGCCGTGGTGGCAGCCGAAGTCCC
TCACCCCAGAGCCGCCAACTGCCTCGGGTAGCCCCTGACAGGGGTCACAGTAGTAGCAGCCGAGGTAGTA
GTGAGGAGGGGCCCTCTGGGCTGCCTGGACCCTGGGCCTTCCCACCCTCTGTGCCTCGAAGCCTGGGCCT
GCTTCCAGCCTTGCGCCTGGAGACCGTAGACCCTGGTGGTGGAGGCTCCTGGGGAGCTGACCAGGAGGCC
CCTGACCCTAATAGCCTCTCCCCTAGCCCCCAGGGCCGACTGGGGCTGGAGGAAGGGGGTTTGGGGCCCT
GA

Translation (1003 aa):
MEGQTRSGSARPGTRTGLGPLPGTHGVLQAEIPSKKVNSSFQLPAKNSGPASSEPRLTLAPVGPRAAVSP
PSERPRLVLSSPRPVLAPLSIAGEQKRPPPPHSSNRAAKSVGQLVVSAAAASKPPPVASVSILAPKSLGQ
LVISASAMPRPSPAPLGSVLTPTSRDQKQLSPTSVGPKPALATSGLSLALASQEQPPQSPSSPSPVPSPV
LSPSQEGHLAAASVTSTPASERQLPARQKDTAVPRPTPPADKCLYTPERAAGPATSPPRAQAFSDPRLSP
SFRARPEAPRHSPEDPVLPPPPQTLPLDVSPGLPESGTRSPGLLSPTFRPGIPSSQTVPPPLPKPPRSPS
RSPSRSPNRSPCLPPAPEVALPKPVTQAAGSGRCPSPNLQAQESPAAATTTTSPTSSWSAQPTCKSDPGF
RITVVTWNVGTAMPPDDVTSLLHLGSGHDNDGADMIAIGLQEVNSMINKRLKDALFTDQWSELFMDALGP
FNFVLVSTVRMQGVILLLFAKYYHLPFLRDVQTDCTRTGLGGYWGNKGGVSVRLAAFGHMLCFLNCHLPA
HMDKAEQRKDNFQTILSLQQFQGPGAHGILDHDLVFWFGDLNFRIESYDLHFVKFAIDSNQLHQLWEKDQ
LNMAKNTWPILKGFQEGPLNFAPTFKFDVGTNKYDTSAKKRKPAWTDRILWKVKAPSGGPSPSGRESHRL
QVTQHSYRSHMEYTVSDHKPVAAQFILQFAFRDDVPLVRLEVADEWARPEQAVVRYRVETVFARSSWDWI
GLYRVGFRHCKDYVAYVWAKHEEVDGNIYQVTFSEESLPKGHGDFILGYYSHHHSILIGVTEPFQISLPT
SESASSSTDSSGTSSEGEDDSTLELLAPKSRSPSPGKSKRHRSRSPGLARFPSLALHPSSRERRGGSRSP
SPQSRQLPRVAPDRGHSSSSRGSSEEGPSGLPGPWAFPPSVPRSLGLLPALRLETVDPGGGGSWGADQEA
PDPNSLSPSPQGRLGLEEGGLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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