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Report for CCDS30023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30023.1 Public Mus musculus X Atp6ap2 23 108 98 CCDS HistoryNCBI Gene:70495Re-query CCDS DB by CCDS ID:30023.1Re-query CCDS DB by GeneID:70495See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033313.2 ENSMUSP00000033313.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033313.2Link to Ensembl Protein Viewer:ENSMUSP00000033313.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033313Re-query CCDS DB by Protein ID:ENSMUSP00000033313
Original member Current member NCBI NM_027439.4 NP_081715.1 Accepted alive Link to Nucleotide Sequence:NM_027439.4Link to Protein Sequence:NP_081715.1Re-query CCDS DB by Nucleotide ID:NM_027439Re-query CCDS DB by Protein ID:NP_081715Link to BLAST:NP_081715.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081715.1 350 Q9CYN9 350 100% 0 0

Chromosomal Locations for CCDS 30023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 12587896 12587935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12594761 12594891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12596156 12596287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12604867 12604962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12605118 12605255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12606281 12606334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12606931 12607080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12608835 12608954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 12615682 12615873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCTGTGCTGGTCGTTCTCCTGTTCTTTCTGGTGGCGGGTGCTTTAGGGAATGAATTTAGCATATTAA
GATCGCCAGGGTCTGTTGTTTTCCGAAATGGAAATTGGCCTATACCAGGAGATCGAATCCCAGACGTAGC
TGCACTGTCCATGGGCTTCTCTGTAAAGGAAGACCTGTCTTGGCCAGGGCTTGCCGTGGGTAACCTATTC
CACCGGCCACGGGCTACCATTATGGTGATGGTGAAGGGGGTGGATAAACTGGCACTTCCGGCAGGCAGCG
TCATCTCCTACCCTTTGGAGAATGCAGTTCCTTTTAGTCTAGACAGCGTTGCAAATTCCATTCACTCCTT
ATTTTCGGAGGAAACACCTGTAGTTTTGCAGTTGGCTCCCAGCGAGGAGAGAGTGTATATGGTGGGGAAA
GCAAACTCGGTGTTTGAAGACCTTTCAGTCACATTGCGGCAGCTCCGTAACCGCCTGTTTCAAGAAAACT
CCCTTCTCAACTCTCTTCCCCTCAATTCTCTGAGTAGGAATAATGAGGTTGACCTGCTCTTTCTCTCCGA
ACTGCAAGTGCTACATGATATTTCCAGTTTGTTGTCTCGTCATAAGCATCTAGCCAAGGACCATTCACCC
GACTTGTATTCATTGGAGCTGGCAGGTTTGGATGAACTTGGGAAGCGTTATGGGGAAGACTCTGAACAGT
TCAGGGATGCTTCTAAGATCCTTGTTGATGCTCTCCAAAAGTTTGCAGATGACATGTACAGTCTCTATGG
TGGGAACGCAGTGGTAGAGTTAGTGACTGTCAAATCATTCGACACATCCCTTGTGAGGAAGTCAAGGACC
ATCCTTGAGGCAAAACAAGAGAACACCCAAAGTCCCTATAACCTTGCATATAAGTATAATTTGGAGTATT
CAGTGGTTTTCAACTTGGTACTGTGGATTATGATCGGCTTGGCCTTGGCTGTGATAATCACCTCTTACAA
CATTTGGAATATGGATCCTGGATATGATAGCATCATCTATAGGATGACAAATCAGAAGATTCGAATAGAT
TGA

Translation (350 aa):
MAVLVVLLFFLVAGALGNEFSILRSPGSVVFRNGNWPIPGDRIPDVAALSMGFSVKEDLSWPGLAVGNLF
HRPRATIMVMVKGVDKLALPAGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYMVGK
ANSVFEDLSVTLRQLRNRLFQENSLLNSLPLNSLSRNNEVDLLFLSELQVLHDISSLLSRHKHLAKDHSP
DLYSLELAGLDELGKRYGEDSEQFRDASKILVDALQKFADDMYSLYGGNAVVELVTVKSFDTSLVRKSRT
ILEAKQENTQSPYNLAYKYNLEYSVVFNLVLWIMIGLALAVIITSYNIWNMDPGYDSIIYRMTNQKIRID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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