CCDS Report for Consensus CDS

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Report for CCDS20519.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
20519.1	Public	Mus musculus	6	Clstn3	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20519.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000008297.4	ENSMUSP00000008297.4	Accepted	alive
		NCBI	NM_153508.4	NP_705728.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_705728.1	956	Q99JH7-1	956	100%	0	0

Chromosomal Locations for CCDS 20519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)

Genome Browser links:

Chromosome	Start	Stop
6	124431592	124431732
6	124431958	124432160
6	124436818	124436953
6	124437375	124437520
6	124438270	124438440
6	124438759	124438985
6	124449490	124449638
6	124449774	124449931
6	124450706	124450759
6	124451306	124451468
6	124456877	124456989
6	124457856	124458137
6	124458544	124458729
6	124459158	124459307
6	124459766	124459974
6	124461532	124461727
6	124462110	124462232
6	124464421	124464484

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2871 nt):
ATGACCCTCCTGCTGGTGTCCCTTTTGCTGGCCTCTCTGCTTCAAATCAGCTCTGGCAACAAAGCCAACA AGCACAAGCCATGGATCGAGGCAGAGTACCAGGGCATTGTCATGGAGAATGACAACACGGTCCTGTTGAA CCCACCACTCTTTGCCTTGGATAAAGATGCTCCACTGCGCTATGCAGGTGAGATCTGCGGCTTCCGGCTC CATGGATCTGGGGTACCCTTCGAGGCTGTGATCCTGGACAAGGCAACGGGTGAAGGGCTGATCCGGGCTA AGGAGCCCGTGGACTGTGAGGCCCAGAAGGAACACACTTTTACCATTCAGGCTTATGACTGTGGCGAGGG ACCCGATGGCACCAATACCAAGAAGTCTCACAAGGCAACCGTGCATGTTCGGGTCAATGATGTGAATGAG TTTGCCCCGGTCTTTGTGGAGCGTCTGTACCGTGCTGCAGTGACGGAGGGGAAGCTGTATGATCGGATCT TACGTGTGGAAGCCATTGATGGCGACTGCTCCCCGCAGTACAGCCAGATCTGCTACTATGAGATCCTTAC GCCCAACACCCCTTTCCTCATTGACAATGATGGCAACATTGAGAACACAGAGAAGCTACAGTACAGTGGC GAGAAACTCTACAAGTTCACAGTGACAGCGTATGACTGTGGGAAGAAGCGAGCGGCAGATGATGCTGAGG TGGAGATTCAGGTGAAGCCCACCTGCAAACCCAGCTGGCAAGGCTGGAACAAAAGGATTGAATATGCCCC AGGAGCCGGGAGCTTGGCTTTGTTCCCTGGCATCCGTCTGGAGACCTGTGATGAGCCACTGTGGAACATT CAGGCCACCATAGAGCTGCAGACCAGCCATGTGGCCAAGGGCTGCGACCGAGACAACTATTCAGAGAGGG CTCTGCGGAAGCTCTGTGGTGCTGCTACTGGGGAGGTGGACCTGTTGCCCATGCCCGGCCCCAATGCCAA CTGGACAGCGGGGCTGTCGGTGCACTACAGCCAGGACAGCAGCCTCATCTACTGGTTCAATGGCACACAA GCTGTGCAAGTTCCCCTGGGTGGTCCAGCAGGGCTGGGCTCTGGGCCGCAGGATGGCTTCAGCGACCACT TTACCCTGTCCTTCTGGATGAAGCATAGTGTGACTCCCAGCAAGGGGAAGAAGGAGGAGGAGACCATTGT GTGTAACACAGTCCAGAATGAGGACGGCTACTCTCACTACTCACTGACTGTCCATGGCTGCAGAATTGCC TTTCTCTACTGGCCGTTGCTTGAGAGTGCTCGTCCTGTCAAGTTCCTCTGGAAGCTGGAGCAGGTGTGTG ATGATGAATGGCATCACTACGCCCTGAACCTGGAGTTCCCCACGGTCACACTGTATACTGACGGTATCTC CTTCGACCCGGCTCTCATCCACGACAATGGTCTCATCCACCCACCCAGGAGGGAACCTGCACTCATGATT GGGGCCTGCTGGACTGAAGAGAAGAACAAAGAGAAGAAGGGGGGAGAGAACAGTACAGACACAGCCTCAG GAGACCCCTTGCTGATCCACCACTACTTTCATGGCTACCTAGCTGGTTTCAGCGTGCGCTCAGGTCGCCT GGAGAGCCGTGAGGTCATCGAGTGCCTCTATGCATGTCGGGAGGGGCTGGACTATAGGGATTTCGAGAGC CTGGGCAAAGGCATGAAGGTCCACGTGAACCCCTCGCAGTCCCTGCTCACCCTGGAGGGGGATGATGTGG AGACCTTCAACCATGCCCTGCAGCATGTGGCTTACATGAACACTCTGCGCTTTGCCACACCCGGCGTCAG GCCCCTGCGCCTCACCACCGCTGTCAAGTGCTTTAGTGAAGAGTCCTGTGTCTCCATCCCTGAAGTGGAG GGCTATGTGGTGGTTCTTCAGCCCGACGCCCCCCAGATCCTTCTGAGTGGCACAGCTCATTTTGCCCGCC CAGCTGTGGACTTTGAGGGACCCGAGGGAGTCCCCTTGTTCCCCGATCTTCAGATCACCTGCTCCATTTC TCACCAGGTGGAGGCCAAAGCAGATGAGAGTTGGCAGGGCACAGTGACAGACACACGCATGTCAGATGAG ATTGTACACAACTTGGACGGCTGTGAGATTTCTCTGGTGGGGGATGACCTAGACCCTGAACGAGAGAGCC TGCTCTTGGACATGGCTTCCCTGCAGCAGCGAGGCCTGGAACTCACCAACACATCTGCCTACCTCACCAT TGCTGGGGTGGAGACCATCACTGTGTATGAAGAGATCCTGAGGCAGGCTCGTTATCAGCTTCGGCATGGA GCTGCCCTTTATGCCAGGAAATTCCGGCTTTCTTGCTCGGAGATGAACGGCCGATACTCCAGCAACGAAT TCATTGTGGAGGTCAACGTCCTGCATAGCATGAACCGGGTGGCCCATCCCAGTCATGTGCTCAGTTCACA GCAGTTCCTGCACCGGGGTCACCAGCCTCCTCCTGAGATGGCTGGACACAGCCTGGCCAGCTCCCACCGG AACTCCATGGTCCCCAGTGCTGCGACTCTCATCATTGTGGTATGCGTGGGCTTTCTGGTGCTTATGGTTA TCCTCGGCCTCGTTCGGATCCACTCCCTTCATCGCCGCGTCTCAGGAACTGGCGGACCTTCAGGGGCTTC CACTGACCCGAAGGACCCTGACCTCTTCTGGGATGACTCTGCTCTCACCATTATTGTCAATCCTATGGAG TCCTACCAGAACCAGCAGACCTGTGTGGCAGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAGCAGTG ACTCGGAAGCAGCCGACTCCCCCAGCAGTGATGAGAGACGCATCATTGAGAGCCCCCCACACCGCTATTG A
Translation (956 aa):
MTLLLVSLLLASLLQISSGNKANKHKPWIEAEYQGIVMENDNTVLLNPPLFALDKDAPLRYAGEICGFRL HGSGVPFEAVILDKATGEGLIRAKEPVDCEAQKEHTFTIQAYDCGEGPDGTNTKKSHKATVHVRVNDVNE FAPVFVERLYRAAVTEGKLYDRILRVEAIDGDCSPQYSQICYYEILTPNTPFLIDNDGNIENTEKLQYSG EKLYKFTVTAYDCGKKRAADDAEVEIQVKPTCKPSWQGWNKRIEYAPGAGSLALFPGIRLETCDEPLWNI QATIELQTSHVAKGCDRDNYSERALRKLCGAATGEVDLLPMPGPNANWTAGLSVHYSQDSSLIYWFNGTQ AVQVPLGGPAGLGSGPQDGFSDHFTLSFWMKHSVTPSKGKKEEETIVCNTVQNEDGYSHYSLTVHGCRIA FLYWPLLESARPVKFLWKLEQVCDDEWHHYALNLEFPTVTLYTDGISFDPALIHDNGLIHPPRREPALMI GACWTEEKNKEKKGGENSTDTASGDPLLIHHYFHGYLAGFSVRSGRLESREVIECLYACREGLDYRDFES LGKGMKVHVNPSQSLLTLEGDDVETFNHALQHVAYMNTLRFATPGVRPLRLTTAVKCFSEESCVSIPEVE GYVVVLQPDAPQILLSGTAHFARPAVDFEGPEGVPLFPDLQITCSISHQVEAKADESWQGTVTDTRMSDE IVHNLDGCEISLVGDDLDPERESLLLDMASLQQRGLELTNTSAYLTIAGVETITVYEEILRQARYQLRHG AALYARKFRLSCSEMNGRYSSNEFIVEVNVLHSMNRVAHPSHVLSSQQFLHRGHQPPPEMAGHSLASSHR NSMVPSAATLIIVVCVGFLVLMVILGLVRIHSLHRRVSGTGGPSGASTDPKDPDLFWDDSALTIIVNPME SYQNQQTCVAGVAGGQQEEEDSSDSEAADSPSSDERRIIESPPHRY

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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