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Report for CCDS52228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52228.1 Public Mus musculus 7 2410002F23Rik 23 108 98 CCDS HistoryNCBI Gene:668661Re-query CCDS DB by CCDS ID:52228.1Re-query CCDS DB by GeneID:668661See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071296.10 ENSMUSP00000071265.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071296.10Link to Ensembl Protein Viewer:ENSMUSP00000071265.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000071296Re-query CCDS DB by Protein ID:ENSMUSP00000071265
Original member Current member EBI ENSMUST00000084937.10 ENSMUSP00000095894.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084937.10Link to Ensembl Protein Viewer:ENSMUSP00000095894.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084937Re-query CCDS DB by Protein ID:ENSMUSP00000095894
Original member Current member EBI ENSMUST00000107948.7 ENSMUSP00000103581.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107948.7Link to Ensembl Protein Viewer:ENSMUSP00000103581.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107948Re-query CCDS DB by Protein ID:ENSMUSP00000103581
Original member Current member EBI ENSMUST00000107949.7 ENSMUSP00000103582.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107949.7Link to Ensembl Protein Viewer:ENSMUSP00000103582.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107949Re-query CCDS DB by Protein ID:ENSMUSP00000103582
Original member Current member EBI ENSMUST00000055858.13 ENSMUSP00000103583.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055858.13Link to Ensembl Protein Viewer:ENSMUSP00000103583.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000055858Re-query CCDS DB by Protein ID:ENSMUSP00000103583
Original member Current member EBI ENSMUST00000107950.8 ENSMUSP00000103584.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107950.8Link to Ensembl Protein Viewer:ENSMUSP00000103584.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107950Re-query CCDS DB by Protein ID:ENSMUSP00000103584
Original member Current member EBI ENSMUST00000188111.6 ENSMUSP00000139694.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188111.6Link to Ensembl Protein Viewer:ENSMUSP00000139694.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188111Re-query CCDS DB by Protein ID:ENSMUSP00000139694
Original member Current member EBI ENSMUST00000188382.1 ENSMUSP00000140200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188382.1Link to Ensembl Protein Viewer:ENSMUSP00000140200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188382Re-query CCDS DB by Protein ID:ENSMUSP00000140200
Original member Current member NCBI NM_025880.4 NP_080156.2 Accepted alive Link to Nucleotide Sequence:NM_025880.4Link to Protein Sequence:NP_080156.2Re-query CCDS DB by Nucleotide ID:NM_025880Re-query CCDS DB by Protein ID:NP_080156Link to BLAST:NP_080156.2

Chromosomal Locations for CCDS 52228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44250673 44251527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGCTGAGAGAGTGCTGGTGCCCACCCAGATAGGCCGGGGGGACCGCTACTACACATACACGGAGTTGT
TGGCTATCTCACGGCGTTTCAAGCAGAACCCCAATGAGCTCATGGTCACCTGGATCCTGCGGGTGTATGA
CCAGGGAGGCCCTGCCCTGTCCCTGAATTCTGGGGAGCTGGGGCTGCTGGGTGACCTCACCCATGATGCC
ATCTTTAACTACCGCTGCAAGGCCCTGCGGGGGGCTGGCTGCCAGACTCTCCTGAGCTGGCTGCTGCAGG
CCTGGCGTCAGCGTTGGGAATCCTCCCTGCATTTTGAGGCCACCGAGTTACCCTTCAGGCCCTGGACCAC
CATGGAGGAAGGCATCCAGTTGGTGCGTGAGCTGGGCATGATTGAGTGGATCTACCTTGACCCAGAAGGG
CCCGTGGACCTGGCCCCAGAGGATGTGGCCTTCACTCAAGGCCTGCAGCGGCGCCTGCTCACAGCAGCCC
CCTCTGAGCTGCGGCTTTCACTGGTCAGCCTGCTGGTACGTGGCATGACAGTGTTGGAGGCTGTGATGGA
GATCCAGACTATTGCTGACGTGGGTCTGCTCTGGCGCCAGAGCCATCCAGGCCGCACCAAGCTCATGTTG
GGGCCCAACCCAACTCGTAAGGACCTCCTAGGCTGGCTGCTCAGCCACGGTGTACCCCGGGAGCAAGTAG
ACAGACAGCCCACCAAGGTACTCCTAGAACTCTACATCAAAGAAGCCAAGCGCAGTCGCGGCCACCCCAA
CTATGGGCTGAACGAGGAGCAGCCCCCACCACCCCCTTACTCCGACCAGGCCTGTGGGGAAGAGCAACCG
GTGCGTCATGACTAA

Translation (284 aa):
MAERVLVPTQIGRGDRYYTYTELLAISRRFKQNPNELMVTWILRVYDQGGPALSLNSGELGLLGDLTHDA
IFNYRCKALRGAGCQTLLSWLLQAWRQRWESSLHFEATELPFRPWTTMEEGIQLVRELGMIEWIYLDPEG
PVDLAPEDVAFTQGLQRRLLTAAPSELRLSLVSLLVRGMTVLEAVMEIQTIADVGLLWRQSHPGRTKLML
GPNPTRKDLLGWLLSHGVPREQVDRQPTKVLLELYIKEAKRSRGHPNYGLNEEQPPPPPYSDQACGEEQP
VRHD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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