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Report for CCDS30122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30122.1 Public Mus musculus X Usp26 23 108 98 CCDS HistoryNCBI Gene:83563Re-query CCDS DB by CCDS ID:30122.1Re-query CCDS DB by GeneID:83563See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069509.3 ENSMUSP00000069140.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069509.3Link to Ensembl Protein Viewer:ENSMUSP00000069140.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000069509Re-query CCDS DB by Protein ID:ENSMUSP00000069140
Original member Current member EBI ENSMUST00000114869.7 ENSMUSP00000110519.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114869.7Link to Ensembl Protein Viewer:ENSMUSP00000110519.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114869Re-query CCDS DB by Protein ID:ENSMUSP00000110519
Original member Current member NCBI NM_031388.2 NP_113565.2 Accepted alive Link to Nucleotide Sequence:NM_031388.2Link to Protein Sequence:NP_113565.2Re-query CCDS DB by Nucleotide ID:NM_031388Re-query CCDS DB by Protein ID:NP_113565Link to BLAST:NP_113565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113565.2 835 Q99MX1 835 100% 0 0

Chromosomal Locations for CCDS 30122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 51754889 51757396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2508 nt):
ATGGAGCCCATATTGATAAATGCTCAAGTCCAGATGTGGAGTGCAAAGGCAGGAATGTCCAAGTCAAGAA
ATGCACTCATTGAAACATGTGTAGGAAAACGAGAAGTTAAACTTATTCTCTATTTCAGCACTGGAAAGAT
TAAGACTTTGCAACTACACGATAATATTAAAAGTGTGGTCCTTCAAACCTATGGCGAAGACCAGAATTAC
CTACATTTGACTTTTAAAAATAATGATTTCTTGTTTGTTGAGAAACTCACCACCACAGATGCCAGAAGAC
TGAAGAGATTTCTAGACAAAACCTCTCAAGGTAGTATTCGGCCAGCCAGAAGTGATGAGAGATGTGGTGA
GCCTAGCACAAGTGCACAGGAGTTGAATGGCTCTGGAAGTTCATGTGAAACAAATAGTGAGTGCTTTGAA
TCACCCAAAGAAAGTGAAATGTGCATGTTTCGTGAGTTGTCTTTGCTTCCATCCTCATCAACCTTTCTTC
ACAATGTAGGATTATTAGAAAACCAATTCATAAAGAGGAAAAGATTTTTCTCTGATTTAGCAAAAAATGA
AAAACAGAGCAACCTGAAGGACAGTATCAGGGACTTTGAGGCAAATTTAGTGGTGTGTATCTCTAATGAA
AAGGGAAAAGAAAGGAATGTAAGAGAAGTAGACATCAGTAAGCCAGGGTTTGGATTTCCATTTGAGACCA
ACTATCCTGAAGATAGTGGTGTGGATGTTCGTGATCTTAATGATCTCATTACAAAATTATTTTCTCCAGT
TCTGTTGGAAACACACTGTATTGAGAACGGCCTAGAGTGGCATGAATATATGAAGACATACTTGCTTTAC
CCAGAGAAATTGTGGCAAGGCCTGCCTAATGTGGGAAACACCTGCTATATAAATGTTGTATTACAGTCTC
TATGCTCAATACCACTGTTTATTAATGATTTATTCAACCAGGGTTTCCCATGGATTAAAGCTCCCAAAGA
TGATTTTAACATGCTCTTGATGCAACTGCTTGTTTTGAAAGATATTTACAACGCAAGATTTAGACAGAAG
TTACTTATAGGTATTACAAAAGCCCTCCCCATATTTGGAGAGATATTTGCTGTTGACAGGCAGAATGATG
CTCATGAGTTTTTAAGTCTCTGTTTAGTTCAGTTGAAGGAGACTTTCCAAAGAGTAACCATGATGTGGCA
GTCTGAAAATGATTCGGGGGATTTTTACTTACTTAAAGACATTTTTGCTGATTATGCTACTATCAACAAA
ATGCCCGTTTGTCCTGTTACCAATAATTTTGAATTTGAGTTGCTAAGCTCCATTTTTTGTAAAGCTTGTG
GCCTGACTCTTTTTAAGGGAGAACCAAGTAGATACCTTTCTATCAACATTCCCCAAGGAGGGAAAGACAT
GTCCATCCAGTCCACTTTAGATCTTTTCTTTAGTGCAGAGGAGCTTGAGCATAGGTGTGAAAAGTGTTTG
TACAACAAATCTGTTTCATTTCACAGGTTTGGCCGGCTACCCAGGGTAATTATTGTTCATCTGAAACGCT
ATCACTTTAATGAGTCATGGGTAATGAAGAAGGATGAGCGGCCCATCCTTGTTTCCAAATACTTAAGGCT
GTCTTGTCACTGTAGCAAAAGCACAAAACCGCCCCCACCCCTTCGCCCAGGTGAACATGTTAAGAATCTT
GACTTATTAAAACCCCTTGAAGTGTTGGGTTCCGAAATACTCAAATTGCCTTTTAATTCAGTGAGGACCT
CTAGATCCAAGGGTTTCGAAACTATAAACATCACATCAAACAGGGAGTCAGAAGCACAAAGTGGGAAAAG
AGTCTCTGAAGTGTTGAGTGGAAAAGTGCAGCAGGAAAATTCAGGGAAAGGTGACACAGCACATATAGTT
GGGTCAGAACTTACAAAGGAGACTGAGAAACTCAAGAAACATGAGGAAGAGCATAGACCCAGTGATTTAG
ATTCTGGTAGTATCAGGGAGGCCCAAAAGTACCAACAGGCTGAGAAATGTAACGAAGGGAGAAGTGATAA
GCAGATTTCCCTAGAGGCACTTACTCAAAGCCGTCCAAAACCAATCTCCCAGGAACAGACAGAAAACCTT
GGGAAAACTACACTGTCACATACCCAGGATAGTAGTCAGAGTTCACAGAGCTCATCAGATTCCAGTAAGA
GCTCCCGATGCAGTGATGATCTCGATAAGAAGGCAAAGCCTACACGCAAGGTGGATCCAACAAAGTTAAA
TAAAAAAGAAGATAATGTTTACAGGCTTGTTAATATTATCAACCATATTGGGAACAGTCCCAATGGAGGC
CACTACATCAATGATGCCTTTGACTTCAAGAGGCAGAGTTGGTTCACTTATAGTGATCTACATGTAACAA
GAACCCAAGAGGACTTTGTATATAGGGGTCGGAGTTCTACTGGGTATGTCTTCTTTTACATGCATAATGA
TATATTTGAAGAGCTCTTGGCAAAGGAAACTCAGTCTACCAGCACATCCAAGGGTTAG

Translation (835 aa):
MEPILINAQVQMWSAKAGMSKSRNALIETCVGKREVKLILYFSTGKIKTLQLHDNIKSVVLQTYGEDQNY
LHLTFKNNDFLFVEKLTTTDARRLKRFLDKTSQGSIRPARSDERCGEPSTSAQELNGSGSSCETNSECFE
SPKESEMCMFRELSLLPSSSTFLHNVGLLENQFIKRKRFFSDLAKNEKQSNLKDSIRDFEANLVVCISNE
KGKERNVREVDISKPGFGFPFETNYPEDSGVDVRDLNDLITKLFSPVLLETHCIENGLEWHEYMKTYLLY
PEKLWQGLPNVGNTCYINVVLQSLCSIPLFINDLFNQGFPWIKAPKDDFNMLLMQLLVLKDIYNARFRQK
LLIGITKALPIFGEIFAVDRQNDAHEFLSLCLVQLKETFQRVTMMWQSENDSGDFYLLKDIFADYATINK
MPVCPVTNNFEFELLSSIFCKACGLTLFKGEPSRYLSINIPQGGKDMSIQSTLDLFFSAEELEHRCEKCL
YNKSVSFHRFGRLPRVIIVHLKRYHFNESWVMKKDERPILVSKYLRLSCHCSKSTKPPPPLRPGEHVKNL
DLLKPLEVLGSEILKLPFNSVRTSRSKGFETINITSNRESEAQSGKRVSEVLSGKVQQENSGKGDTAHIV
GSELTKETEKLKKHEEEHRPSDLDSGSIREAQKYQQAEKCNEGRSDKQISLEALTQSRPKPISQEQTENL
GKTTLSHTQDSSQSSQSSSDSSKSSRCSDDLDKKAKPTRKVDPTKLNKKEDNVYRLVNIINHIGNSPNGG
HYINDAFDFKRQSWFTYSDLHVTRTQEDFVYRGRSSTGYVFFYMHNDIFEELLAKETQSTSTSKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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