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Report for CCDS27777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27777.1 Public Mus musculus 15 Slc38a1 23 108 98 CCDS HistoryNCBI Gene:105727Re-query CCDS DB by CCDS ID:27777.1Re-query CCDS DB by GeneID:105727See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088452.10 ENSMUSP00000085799.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088452.10Link to Ensembl Protein Viewer:ENSMUSP00000085799.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088452Re-query CCDS DB by Protein ID:ENSMUSP00000085799
Original member Current member EBI ENSMUST00000088454.12 ENSMUSP00000085801.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088454.12Link to Ensembl Protein Viewer:ENSMUSP00000085801.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088454Re-query CCDS DB by Protein ID:ENSMUSP00000085801
Original member Current member EBI ENSMUST00000100262.3 ENSMUSP00000097833.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100262.3Link to Ensembl Protein Viewer:ENSMUSP00000097833.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100262Re-query CCDS DB by Protein ID:ENSMUSP00000097833
Original member Current member NCBI NM_001166456.1 NP_001159928.1 Accepted alive Link to Nucleotide Sequence:NM_001166456.1Link to Protein Sequence:NP_001159928.1Re-query CCDS DB by Nucleotide ID:NM_001166456Re-query CCDS DB by Protein ID:NP_001159928Link to BLAST:NP_001159928.1
Original member Current member NCBI NM_001166458.1 NP_001159930.1 Accepted alive Link to Nucleotide Sequence:NM_001166458.1Link to Protein Sequence:NP_001159930.1Re-query CCDS DB by Nucleotide ID:NM_001166458Re-query CCDS DB by Protein ID:NP_001159930Link to BLAST:NP_001159930.1
Original member Current member NCBI NM_134086.4 NP_598847.2 Accepted alive Link to Nucleotide Sequence:NM_134086.4Link to Protein Sequence:NP_598847.2Re-query CCDS DB by Nucleotide ID:NM_134086Re-query CCDS DB by Protein ID:NP_598847Link to BLAST:NP_598847.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159928.1 485 Q8K2P7-1 485 100% 0 0
NP_001159930.1 485 Q8K2P7-1 485 100% 0 0
NP_598847.2 485 Q8K2P7-1 485 100% 0 0

Chromosomal Locations for CCDS 27777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 96576711 96576812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96578530 96578627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96578721 96578862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96579315 96579433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96584344 96584444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96585550 96585629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96586862 96586972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96587092 96587150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96588928 96589010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96590060 96590141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96590420 96590512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96592507 96592580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96609856 96609971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96616142 96616217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 96623956 96624077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGATGCATTTCAAAAGTGGCCTCGAGCTAACGGAGCTGCAGAACATGACGGTGCCCGAAGATGACAACG
TCAGCAACGACTCTAATGACTTCACAGAAGTAGAAAACGGCCAGATAAATAGCAAGTTCATCTCAGATCG
GGAGAGTAGGAGGAGTCTCACAAACAGCCATCTGGAGAAAAGGAAATGCGACGAGTATATTCCAGGAACA
ACCTCCCTGGGAATGTCTGTCTTTAACCTGAGCAACGCCATCATGGGCAGTGGAATCTTGGGCCTTGCCT
TCGCCTTGGCCAACACCGGGATCCTCCTCTTTCTGATACTTCTGACTTCGGTGACACTGCTGTCTATATA
TTCAATAAACCTACTGCTGATCTGTTCCAAGGAAACCGGCTGCATGGTGTATGAGAAGCTGGGAGAGCAA
GTCTTCGGCACCACGGGGAAGCTGGTGATCTTCGGAGCCACCTCTCTGCAGAACACTGGGGCGATGCTGA
GCTACCTCTTCATAGTAAAAAACGAACTTCCTTCAGCCATAAAATCCCTCATGGGAGAGGAGGATGCATT
TTCAGCCTGGTACGTCGATGGCCGAGTGTTGGTGGTGATGGTGACCTTTGGCATAATCCTTCCGCTGTGT
CTCTTGAAGAACCTGGGGTATCTTGGCTACACGAGTGGGTTTTCCCTAAGCTGCATGATGTTTTTCCTAA
TAGTGGTCATCTACAAGAAATTTCAGACTCCCTGCATGAGTGTGGAGCAGAACTCGACAGTCAGTGCTAA
TGTGACCGACGCGTGCACACCAAAGTATGTCACCTTCAACTCAAAGACGGTGTATGCTTTACCAACCATC
GCCTTCGCGTTTGTCTGCCACCCGTCCGTCCTGCCAATCTACAGCGAGCTCAAAGACCGGTCACAGAAGA
AAATGCAGATGGTTTCCAACATCTCCTTCTTTGCTATGTTTGTCATGTACTTCCTGACGGCCATCTTTGG
GTACTTGACGTTTTATGAAAAGGTGCAGTCAGATCTCCTTCACAAGTACCAGAGCACAGGCGACATTCTC
ATCCTAACCGTGCGGCTGGCCGTCATCGTGGCCGTCATCCTCACCGTGCCTGTGCTGTTTTTCACAGTTC
GATCATCGTTATTTGAGCTGGCCAAGAAGACAAAGTTCCACCTGTGCCGCCATGTCTTGGTGACCATCAT
ACTCTTGATCATTATCAACCTGTTGGTGATCTTCATCCCCTCCATGAAGGATATCTTTGGAGTCGTAGGA
GTCACGTCTGCTAATATGCTCATTTTCATTCTTCCTTCGTCTCTTTATTTAAAAATCACGAACCAGGACG
GAGATAAAGGCACTCAAAGAATTTGGGCGGCCCTTTTCTTGGGCTTGGGGGTGTTGTTCTCCTTGATCAG
CATCCCTCTGGTCATCTACGACTGGGCTTGCTCCTCTGGCACCGACGAAGGCCACTGA

Translation (485 aa):
MMHFKSGLELTELQNMTVPEDDNVSNDSNDFTEVENGQINSKFISDRESRRSLTNSHLEKRKCDEYIPGT
TSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLILLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQ
VFGTTGKLVIFGATSLQNTGAMLSYLFIVKNELPSAIKSLMGEEDAFSAWYVDGRVLVVMVTFGIILPLC
LLKNLGYLGYTSGFSLSCMMFFLIVVIYKKFQTPCMSVEQNSTVSANVTDACTPKYVTFNSKTVYALPTI
AFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFLTAIFGYLTFYEKVQSDLLHKYQSTGDIL
ILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKTKFHLCRHVLVTIILLIIINLLVIFIPSMKDIFGVVG
VTSANMLIFILPSSLYLKITNQDGDKGTQRIWAALFLGLGVLFSLISIPLVIYDWACSSGTDEGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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