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Report for CCDS20467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20467.1 Public Mus musculus 6 Hnrnpf 23 108 98 CCDS HistoryNCBI Gene:98758Re-query CCDS DB by CCDS ID:20467.1Re-query CCDS DB by GeneID:98758See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035493.13 ENSMUSP00000045048.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035493.13Link to Ensembl Protein Viewer:ENSMUSP00000045048.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035493Re-query CCDS DB by Protein ID:ENSMUSP00000045048
Original member Current member EBI ENSMUST00000167182.7 ENSMUSP00000126817.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167182.7Link to Ensembl Protein Viewer:ENSMUSP00000126817.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167182Re-query CCDS DB by Protein ID:ENSMUSP00000126817
Original member Current member EBI ENSMUST00000163168.8 ENSMUSP00000130023.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163168.8Link to Ensembl Protein Viewer:ENSMUSP00000130023.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163168Re-query CCDS DB by Protein ID:ENSMUSP00000130023
Original member Current member EBI ENSMUST00000180341.1 ENSMUSP00000136700.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180341.1Link to Ensembl Protein Viewer:ENSMUSP00000136700.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180341Re-query CCDS DB by Protein ID:ENSMUSP00000136700
Original member Current member EBI ENSMUST00000180020.7 ENSMUSP00000137632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180020.7Link to Ensembl Protein Viewer:ENSMUSP00000137632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180020Re-query CCDS DB by Protein ID:ENSMUSP00000137632
Original member Current member NCBI NM_001166427.1 NP_001159899.1 Accepted alive Link to Nucleotide Sequence:NM_001166427.1Link to Protein Sequence:NP_001159899.1Re-query CCDS DB by Nucleotide ID:NM_001166427Re-query CCDS DB by Protein ID:NP_001159899Link to BLAST:NP_001159899.1
Original member Current member NCBI NM_001166428.1 NP_001159900.1 Accepted alive Link to Nucleotide Sequence:NM_001166428.1Link to Protein Sequence:NP_001159900.1Re-query CCDS DB by Nucleotide ID:NM_001166428Re-query CCDS DB by Protein ID:NP_001159900Link to BLAST:NP_001159900.1
Original member Current member NCBI NM_001166429.1 NP_001159901.1 Accepted alive Link to Nucleotide Sequence:NM_001166429.1Link to Protein Sequence:NP_001159901.1Re-query CCDS DB by Nucleotide ID:NM_001166429Re-query CCDS DB by Protein ID:NP_001159901Link to BLAST:NP_001159901.1
Original member Current member NCBI NM_001166430.1 NP_001159902.1 Accepted alive Link to Nucleotide Sequence:NM_001166430.1Link to Protein Sequence:NP_001159902.1Re-query CCDS DB by Nucleotide ID:NM_001166430Re-query CCDS DB by Protein ID:NP_001159902Link to BLAST:NP_001159902.1
Original member Current member NCBI NM_001166431.1 NP_001159903.1 Accepted alive Link to Nucleotide Sequence:NM_001166431.1Link to Protein Sequence:NP_001159903.1Re-query CCDS DB by Nucleotide ID:NM_001166431Re-query CCDS DB by Protein ID:NP_001159903Link to BLAST:NP_001159903.1
Original member Current member NCBI NM_001166432.1 NP_001159904.1 Accepted alive Link to Nucleotide Sequence:NM_001166432.1Link to Protein Sequence:NP_001159904.1Re-query CCDS DB by Nucleotide ID:NM_001166432Re-query CCDS DB by Protein ID:NP_001159904Link to BLAST:NP_001159904.1
Original member Current member NCBI NM_133834.2 NP_598595.1 Accepted alive Link to Nucleotide Sequence:NM_133834.2Link to Protein Sequence:NP_598595.1Re-query CCDS DB by Nucleotide ID:NM_133834Re-query CCDS DB by Protein ID:NP_598595Link to BLAST:NP_598595.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159899.1 415 Q9Z2X1-1 415 100% 0 0
NP_001159900.1 415 Q9Z2X1-1 415 100% 0 0
NP_001159901.1 415 Q9Z2X1-1 415 100% 0 0
NP_001159902.1 415 Q9Z2X1-1 415 100% 0 0
NP_001159903.1 415 Q9Z2X1-1 415 100% 0 0
NP_001159904.1 415 Q9Z2X1-1 415 100% 0 0
NP_598595.1 415 Q9Z2X1-1 415 100% 0 0

Chromosomal Locations for CCDS 20467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 117923757 117925004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGATGCTGGGCCCTGAGGGAGGTGAAGGCTATGTGGTCAAACTCCGTGGCCTACCCTGGTCCTGCTCAA
TTGAGGACGTACAAAACTTCCTCTCCGACTGCACAATTCATGATGGGGTCGCAGGTGTTCATTTCATTTA
TACTAGAGAAGGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGAGTCAGAAGATGATGTAAAATTGGCT
CTGAAAAAAGACAGGGAAAGCATGGGACACCGGTATATTGAGGTGTTCAAGTCACACAGAACCGAGATGG
ATTGGGTGTTGAAGCACAGTGGTCCAAACAGCGCCGACAGTGCCAATGATGGCTTTGTGAGGCTTCGGGG
ACTCCCATTTGGATGCACAAAGGAAGAAATCGTTCAGTTCTTCTCAGGGTTGGAAATTGTGCCAAACGGG
ATCACACTACCTGTGGACCCGGAAGGCAAGATTACAGGGGAGGCCTTCGTTCAGTTTGCCTCACAAGAGT
TAGCTGAGAAAGCTTTAGGGAAGCACAAGGAGAGAATAGGGCACAGGTATATTGAAGTGTTTAAGAGCAG
TCAGGAGGAAGTTAGATCATACTCAGATCCACCTCTGAAGTTTATGTCTGTGCAAAGGCCTGGGCCTTAT
GACAGGCCTGGCACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAGGTCTGGATAGGATGAGGTCTG
GTGCCTATAGTGCAGGCTATGGGGGCTATGAAGAATACAGTGGCCTCAGTGATGGCTATGGCTTCACCAC
TGACCTGTTTGGGAGAGACCTCAGCTATTGTCTCTCAGGAATGTATGACCACAGATATGGAGACAGCGAG
TTCACAGTGCAGAGCACCACCGGCCACTGCGTCCACATGAGAGGGCTGCCCTACAAAGCAACGGAGAACG
ACATTTACAACTTCTTCTCTCCACTCAACCCTGTGAGAGTTCATATTGAGATTGGTCCTGATGGAAGAGT
GACGGGAGAAGCTGATGTTGAGTTTGCTACTCATGAAGAAGCAGTGGCAGCTATGTCCAAGGACAGGGCC
AACATGCAGCACAGATACATAGAACTCTTCCTGAATTCAACAACAGGGGCTAGCAATGGGGCTTATAGCA
GCCAGGTGATGCAGGGCATGGGCGTGTCAGCTGCCCAGGCAACTTACAGTGGCCTGGAGAGCCAGTCAGT
GAGTGGCTGTTACGGGGCCGGCTACAGCGGTCAGAACAGCATGGGCGGATATGATTAG

Translation (415 aa):
MMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA
LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG
ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPY
DRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE
FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA
NMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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