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Report for CCDS53337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53337.1 Public Homo sapiens 1 SSX2IP 24 110 108 CCDS HistoryNCBI Gene:117178Re-query CCDS DB by CCDS ID:53337.1Re-query CCDS DB by GeneID:117178See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53337.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437941.6 ENSP00000412781.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437941.6Link to Ensembl Protein Viewer:ENSP00000412781.2Re-query CCDS DB by Nucleotide ID:ENST00000437941Re-query CCDS DB by Protein ID:ENSP00000412781
Original member Current member EBI ENST00000605755.5 ENSP00000474480.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000605755.5Link to Ensembl Protein Viewer:ENSP00000474480.1Re-query CCDS DB by Nucleotide ID:ENST00000605755Re-query CCDS DB by Protein ID:ENSP00000474480
Original member Current member NCBI NM_001166294.2 NP_001159766.1 Accepted alive Link to Nucleotide Sequence:NM_001166294.2Link to Protein Sequence:NP_001159766.1Re-query CCDS DB by Nucleotide ID:NM_001166294Re-query CCDS DB by Protein ID:NP_001159766Link to BLAST:NP_001159766.1
Original member Current member NCBI NM_001166295.2 NP_001159767.1 Accepted alive Link to Nucleotide Sequence:NM_001166295.2Link to Protein Sequence:NP_001159767.1Re-query CCDS DB by Nucleotide ID:NM_001166295Re-query CCDS DB by Protein ID:NP_001159767Link to BLAST:NP_001159767.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159766.1 587 Q9Y2D8-3 587 100% 0 0
NP_001159767.1 587 Q9Y2D8-3 587 100% 0 0

Chromosomal Locations for CCDS 53337.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 84647433 84647607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84650362 84650527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84651883 84651997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84655832 84656005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84656348 84656484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84658318 84658468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84662198 84662375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84662455 84662530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84664417 84664552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84666122 84666232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84669681 84669893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84670646 84670777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGTCTCCATCAAGTTTATACTCACAGCAAGTGCTATGTTCTTCAATACCTTTATCGAAAAATGTGCACA
GTTTTTTCAGTGCCTTCTGCACAGAAGATAATATTGAACAGAGTATCTCATATCTTGATCAGGAATTGAC
TACTTTTGGTTTTCCTTCATTATATGAAGAATCCAAAGGTAAAGAGACAAAGAGAGAGTTAAATATAGTA
GCTGTACTAAATTGTATGAATGAGCTGCTTGTGCTTCAGCGGAAGAACCTTCTAGCTCAGGAAAATGTGG
AGACACAGAATTTGAAGCTGGGAAGTGATATGGACCATCTACAGAGCTGCTACTCAAAACTTAAGGAACA
ACTGGAAACCTCCAGGAGGGAAATGATTGGGCTTCAGGAAAGAGACAGACAGTTACAATGTAAGAACAGG
AATTTGCATCAGCTACTAAAGAATGAGAAAGATGAGGTGCAAAAATTACAAAATATCATTGCAAGTCGAG
CTACTCAGTATAATCATGATATGAAGAGAAAAGAGCGTGAATATAATAAACTGAAGGAACGTCTACATCA
ACTTGTTATGAACAAGAAAGATAAGAAAATAGCTATGGACATTTTGAATTATGTCGGGAGAGCTGATGGA
AAAAGAGGCTCCTGGAGGACTGGTAAAACTGAAGCCAGGAATGAAGATGAAATGTATAAAATTCTCTTGA
ATGATTATGAATATCGTCAGAAACAAATCCTAATGGAAAATGCAGAACTTAAGAAGGTTCTTCAACAAAT
GAAAAAGGAAATGATTTCTCTTCTTTCTCCCCAAAAGAAGAAACCTAGAGAAAGAGTAGATGATAGTACA
GGAACTGTTATTTCCGATGTTGAAGAAGATGCCGGGGAACTAAGCAGAGAGAGTATGTGGGACCTTTCCT
GTGAAACTGTGAGAGAGCAGCTTACAAACAGCATCAGAAAACAGTGGAGAATTTTGAAAAGTCATGTAGA
AAAGCTTGATAACCAAGTTTCAAAGGTACACCTGGAAGGTTTTAATGATGAAGATGTAATCTCACGACAA
GACCATGAACAAGAAACTGAAAAACTCGAGTTAGAAATTCAGCAGTGTAAAGAAATGATTAAAACTCAGC
AACAGCTTTTACAGCAGCAGCTCGCTACTGCATATGATGATGATACCACTTCACTATTACGAGACTGTTA
TTTGTTGGAAGAAAAGGAACGTCTCAAAGAAGAATGGTCCCTTTTTAAAGAGCAGAAAAAGAATTTTGAG
AGGGAGAGACGAAGCTTTACAGAAGCCGCTATTCGCCTGGGATTGGAGAGAAAGGCATTTGAAGAAGAAA
GAGCCAGTTGGTTAAAGCAGCAGTTTCTAAATATGACTACCTTTGACCACCAGAACTCAGAAAATGTGAA
ACTTTTCAGTGCCTTCTCAGGAAGTTCTGATTGGGACAATCTTATAGTGCACTCGAGGCAGCCGCAAAAG
AAGCCTCACAGTGTGTCTAATGGGTCTCCAGTTTGCATGTCTAAACTTACTAAATCTCTTCCTGCTTCAC
CTTCCACTTCAGACTTTTGCCAGACACGTTCCTGCATATCTGAACATAGTTCAATCAATGTACTGAATAT
AACTGCTGAAGAAATTAAACCAAATCAGGTTGGAGGAGAATGTACAAATCAAAAATGGAGTGTGGCATCA
AGACCTGGATCACAGGAAGGTTGCTATAGTGGATGCTCCTTGAGCTACACAAATTCTCATGTAGAAAAAG
ATGACTTACCTTAG

Translation (587 aa):
MSPSSLYSQQVLCSSIPLSKNVHSFFSAFCTEDNIEQSISYLDQELTTFGFPSLYEESKGKETKRELNIV
AVLNCMNELLVLQRKNLLAQENVETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDRQLQCKNR
NLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMDILNYVGRADG
KRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISLLSPQKKKPRERVDDST
GTVISDVEEDAGELSRESMWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQ
DHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFE
RERRSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSSDWDNLIVHSRQPQK
KPHSVSNGSPVCMSKLTKSLPASPSTSDFCQTRSCISEHSSINVLNITAEEIKPNQVGGECTNQKWSVAS
RPGSQEGCYSGCSLSYTNSHVEKDDLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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