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Report for CCDS73958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73958.1 Public Homo sapiens 17 SENP3 24 110 108 CCDS HistoryNCBI Gene:26168Re-query CCDS DB by CCDS ID:73958.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73958.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321337.12 ENSP00000314029.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321337.12Link to Ensembl Protein Viewer:ENSP00000314029.8Re-query CCDS DB by Nucleotide ID:ENST00000321337Re-query CCDS DB by Protein ID:ENSP00000314029
Original member Current member EBI ENST00000429205.6 ENSP00000403712.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429205.6Link to Ensembl Protein Viewer:ENSP00000403712.2Re-query CCDS DB by Nucleotide ID:ENST00000429205Re-query CCDS DB by Protein ID:ENSP00000403712
Original member Current member NCBI NM_015670.6 NP_056485.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015670.6Link to Protein Sequence:NP_056485.2Re-query CCDS DB by Nucleotide ID:NM_015670Re-query CCDS DB by Protein ID:NP_056485Link to BLAST:NP_056485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056485.2 574 Q9H4L4 574 100% 0 0

Chromosomal Locations for CCDS 73958.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7563077 7563791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7564625 7564864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7564959 7565070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7565440 7565587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7565717 7565764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7566927 7567004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7570356 7570493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7570681 7570764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7570883 7570933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7571373 7571483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGAAAGAGACTATACAAGGGACCGGGTCCTGGGGGCCTGAGCCTCCTGGACCCGGCATACCCCCAGCTT
ACTCAAGTCCCAGGCGGGAGCGTCTTCGTTGGCCCCCACCTCCCAAACCCCGACTCAAGTCAGGTGGAGG
GTTTGGGCCAGATCCTGGGTCAGGGACCACAGTGCCAGCCAGACGCCTCCCTGTCCCCCGACCCTCTTTT
GATGCCTCAGCAAGTGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGATGAAGATGAAGAGGAGGAAGTGG
CAGCTTGGAGGCTGCCCCCAAGATGGAGTCAGCTGGGAACCTCCCAGCGGCCCCGCCCTTCCCGCCCCAC
TCATCGAAAAACCTGCTCACAGCGCCGCCGCCGAGCCATGAGAGCCTTCCGGATGCTGCTCTACTCAAAA
AGCACCTCGCTGACATTCCACTGGAAGCTTTGGGGGCGCCACCGGGGCCGGCGGCGGGGCCTCGCACACC
CCAAGAACCATCTTTCACCCCAGCAAGGGGGTGCGACGCCACAGGTGCCATCCCCCTGTTGTCGTTTTGA
CTCCCCCCGGGGGCCACCTCCACCCCGGCTGGGTCTGCTAGGTGCTCTCATGGCTGAGGATGGGGTGAGA
GGGTCTCCACCAGTGCCCTCTGGGCCCCCCATGGAGGAAGATGGACTCAGGTGGACTCCAAAGTCTCCTC
TGGACCCTGACTCGGGCCTCCTTTCATGTACTCTGCCCAACGGTTTTGGGGGACAATCTGGGCCAGAAGG
GGAGCGCAGCTTGGCACCCCCTGATGCCAGCATCCTCATCAGCAATGTGTGCAGCATCGGGGACCATGTG
GCCCAGGAGCTTTTTCAGGGCTCAGATTTGGGCATGGCAGAAGAGGCAGAGAGGCCTGGGGAGAAAGCCG
GCCAGCACAGCCCCCTGCGAGAGGAGCATGTGACCTGCGTACAGAGCATCTTGGACGAATTCCTTCAAAC
GTATGGCAGCCTCATACCCCTCAGCACTGATGAGGTAGTAGAGAAGCTGGAGGACATTTTCCAGCAGGAG
TTTTCCACCCCTTCCAGGAAGGGCCTGGTGTTGCAGCTGATCCAGTCTTACCAGCGGATGCCAGGCAATG
CCATGGTGAGGGGCTTCCGAGTGGCTTATAAGCGGCACGTGCTGACCATGGATGACTTGGGGACCTTGTA
TGGACAGAACTGGCTCAATGACCAGGTGATGAACATGTATGGAGACCTGGTCATGGACACAGTCCCTGAA
AAGGTGCATTTCTTCAATAGTTTCTTCTATGATAAACTCCGTACCAAGGGTTATGATGGGGTGAAAAGGT
GGACCAAAAACGTGGACATCTTCAATAAGGAGCTACTGCTAATCCCCATCCACCTGGAGGTGCATTGGTC
CCTCATCTCTGTTGATGTGAGGCGACGCACCATCACCTATTTTGACTCGCAGCGTACCCTAAACCGCCGC
TGCCCTAAGCATATTGCCAAGTATCTACAGGCAGAGGCGGTAAAGAAAGACCGACTGGATTTCCACCAGG
GCTGGAAAGGTTACTTCAAAATGAATGTGGCCAGGCAGAATAATGACAGTGACTGTGGTGCTTTTGTGTT
GCAGTACTGCAAGCATCTGGCCCTGTCTCAGCCATTCAGCTTCACCCAGCAGGACATGCCCAAACTTCGT
CGGCAGATCTACAAGGAGCTGTGTCACTGCAAACTCACTGTGTGA

Translation (574 aa):
MKETIQGTGSWGPEPPGPGIPPAYSSPRRERLRWPPPPKPRLKSGGGFGPDPGSGTTVPARRLPVPRPSF
DASASEEEEEEEEEEDEDEEEEVAAWRLPPRWSQLGTSQRPRPSRPTHRKTCSQRRRRAMRAFRMLLYSK
STSLTFHWKLWGRHRGRRRGLAHPKNHLSPQQGGATPQVPSPCCRFDSPRGPPPPRLGLLGALMAEDGVR
GSPPVPSGPPMEEDGLRWTPKSPLDPDSGLLSCTLPNGFGGQSGPEGERSLAPPDASILISNVCSIGDHV
AQELFQGSDLGMAEEAERPGEKAGQHSPLREEHVTCVQSILDEFLQTYGSLIPLSTDEVVEKLEDIFQQE
FSTPSRKGLVLQLIQSYQRMPGNAMVRGFRVAYKRHVLTMDDLGTLYGQNWLNDQVMNMYGDLVMDTVPE
KVHFFNSFFYDKLRTKGYDGVKRWTKNVDIFNKELLLIPIHLEVHWSLISVDVRRRTITYFDSQRTLNRR
CPKHIAKYLQAEAVKKDRLDFHQGWKGYFKMNVARQNNDSDCGAFVLQYCKHLALSQPFSFTQQDMPKLR
RQIYKELCHCKLTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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