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Report for CCDS27306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27306.1 Public Mus musculus 14 Pcdh20 23 108 98 CCDS HistoryNCBI Gene:219257Re-query CCDS DB by CCDS ID:27306.1Re-query CCDS DB by GeneID:219257See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061628.6 ENSMUSP00000054774.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061628.6Link to Ensembl Protein Viewer:ENSMUSP00000054774.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061628Re-query CCDS DB by Protein ID:ENSMUSP00000054774
Original member Current member EBI ENSMUST00000192557.1 ENSMUSP00000141860.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192557.1Link to Ensembl Protein Viewer:ENSMUSP00000141860.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192557Re-query CCDS DB by Protein ID:ENSMUSP00000141860
Original member Current member NCBI NM_178685.5 NP_848800.3 Accepted alive Link to Nucleotide Sequence:NM_178685.5Link to Protein Sequence:NP_848800.3Re-query CCDS DB by Nucleotide ID:NM_178685Re-query CCDS DB by Protein ID:NP_848800Link to BLAST:NP_848800.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848800.3 952 Q8BIZ0 952 100% 0 0

Chromosomal Locations for CCDS 27306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 88467004 88469730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88470859 88470990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2859 nt):
ATGCGCGGCCGAGGGAACGCGCGCAGCTTGCTGGTCCAGGCAGTGAGCTTGCGCCCGGCGACCTGGCACC
CGTGCCTGGATATGGGGCATCTACATCGTCCCAGCAGCAGGACCAGCCACAGGAACCTGCCGCATGTTTT
TCTGCTTTTCCTCTTCGTGGGACCCTTCAATTGCCTCGCGAGTTACAGCCGTGCTACCGAGCTTCTGTAC
AGCCTAAATGAGGGACTGCCCGCCGGAGTGCTCATAGGCAGCCTGGCGGAGGACCTGAGGCTGCTGCCTC
GGGCCTCTGGGAGACAGAACCAGCAGTTGCTGCATCCAGAGCGCACTGCCTCTGAGGGGAACCCCCCTCT
CTCTTTCAGCTTGGCCTCCGGGGGACTGAGTGGCCAGTATGTGACCCTAAACAACCGCTCCGGCGAGCTG
CACACTTCTGCACAGGAGATCGACAGAGAAGCATTGTGCCTGGATGGGGGCGGTGGGGCTGCCTGGGCCG
GCAGTACCTCCATTGCCTCCTCTCCTTCTTCTGACTCTTGCCTTTTGCTTCTGGACGTGCTGGTCCTGCC
TCAGGAATATTTTCGGTTTGTGAAGGTGAAAATTGCCATCAGGGATATCAATGACAATGCTCCGCAGTTC
CCCATTTCTGAAATCTCTGTTTGGGTCCCAGAAAATTCACCTGTAAATACCCGATTGGCTATAGAGCATC
CTGCTGTGGACCCTGATGTAGGCATTAACGGTGTGCAAACCTATCGCTTACTAGACTACCATGGCATGTT
TACCCTGGACGTGGAGGAGAATGAGAACGGGGAGCGCACACCCTACTTGATTGTCATGGGTGCTTTGGAC
AGAGAAACCCAGGACCAGTATGTGAGCATCATCATAGCTGAGGATGGTGGGTCTCCACCACTGCTGGGCA
GTGCCACCCTCACCATTGGCATAAGTGACATTAATGACAATTGTCCTCTCTTTATAGACTCACAAATTAA
TGTCACCGTTTATGGGAATGCTACAGTGGGCACCCCAGTTGCAACAGTCCAGGCTGTGGATAGAGACTTG
GGGACAAATGCACAGATCACTTACAGTTACAGCCAGAAAGTTCCACAGGAAACCAAGGATTTATTCCACC
TGGATGAAGTTACTGGAGTCATTAAGCTTTCCAGTAAGATTGGCGGGAGTGTCCTACAGACACATAAGCT
CACCATCCTAGCTAATGGACCTGGCTGTATCCCTGCAGTGATCACTGCTCTTGTATCGATCATCAAAGTC
GTTTTCAGACCCCCAGAAATCGTCCCACGTTATATCGCAAATGAGGTGGATGGTGTTGTGTACCTGAAAG
AACTGGAGCCTGTTAATACTCCAATTGCGTTTTTTACCATCAGAGATCCAGAAGGTAAATACAAGATTAA
CTGCTTCTTGGATGGTGAAGGGCCATTCAGGCTGGCACCCTACAAGCCGTACAACAATGAATATTTGTTG
GAGACCACAAAGCCTATGGACTATGAAGTGCAGTCCTTCTATGAAATAGCTGTAGTGGCCTGGAACTCAG
AGGGATTTCATGTCAAGAGAATCATTAAAGTACAACTTTTAGACGACAATGACAATGCCCCTGTTTTCCT
TCAGCCCTTGATAGAATTGACCATTGAAGAAAACAACGCACCCAATGCCTTTCTGACAAAGCTCTACGCT
ACAGATGCTGACAGTGGAGAGATGGGACGAGTTTCCTACTTCTTGGGACCTGATGCTCCGTCATACTTTT
CCTTAGACAGTGTCACAGGGATTCTGACAGTTTCTACTCAGCTGGACAGAGAAGAGAAAGAGAAGTACAG
GTATACTGTCCGAGCAGTGGACTGTGGGACGCCACCCAGAGAATCAGTGGCTACAGTGGCCCTCACTGTG
TTGGATAAAAATGACAACAGTCCGAGGTTCATCAACAAGGACTTCAGCTTTTTTGTCCCAGAAAACTTTC
CGGGGTATGGTGAAATTGGAGTCATCAGTGTAACAGATGCCGATGCTGGAAGGAACGGATGGGTAGCCCT
GTCCGTAATGAACCAGAGTGACATTTTTGTCATAGACACAGGCAAGGGTATGTTGAGAGCTAAAGTCTCT
TTAGACAGAGAACAGCAAAGCTCTTACACTCTGTGGGTGGAGGCTGTTGACGGGGGTGAGCCTGCCCTTT
CCTCTACCACAAAAATCACAATTCTTCTTCTGGACATCAACGATAACCCTCCTCTTGTTTTATTCCCTCA
ATCTAATATGTCTTATTTGCTGGTCCTACCTTCTACTCTCCCTGGCTCACCAGTAACAGAAGTCTATGCG
GTTGACAAAGACACAGGCATGAATGCTGTCATAGCTTATAGCATCATAGGGAGAAGAGGTCCCAGGCCTG
AGTCTTTCAGAATTGACCCCAAGACTGGCAACATCACTCTGGAGGAAGCCTTGCTTCAGACAGATTATGG
GTTGCATCGCTTACTGGTGAAAGTGAGTGATCACGGATACCCTGAGCCTCTCCACTCCACAGTCATGGTG
AACTTATTTGTCAATGACACTGTCAGTAACGAGAGCTACATTGAGAGCCTTTTGAGAAAGGAGCCAGAAA
TTAATATAGAAGAGAAAGAACCACAAATCTCAATAGAGCCAACTCATAGGAAGGTAGAATCTATGTCCTG
TATGCCCACATTGGTAGCTCTGTCAGTCATAAGCTTGGGCTCCATCACACTAGTTACAGGGATGGGAATA
TACATCTGCTTACGGAAAGGTAAAAAGCATCACAGGGAAGATGACAATTTGGAAGTACAGATTCCATTGA
AAGGAAAAATTGACTTGTGTATGAGAGAGAGAAAACCAGTGGATATTTCTAACATTTGA

Translation (952 aa):
MRGRGNARSLLVQAVSLRPATWHPCLDMGHLHRPSSRTSHRNLPHVFLLFLFVGPFNCLASYSRATELLY
SLNEGLPAGVLIGSLAEDLRLLPRASGRQNQQLLHPERTASEGNPPLSFSLASGGLSGQYVTLNNRSGEL
HTSAQEIDREALCLDGGGGAAWAGSTSIASSPSSDSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQF
PISEISVWVPENSPVNTRLAIEHPAVDPDVGINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALD
RETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFIDSQINVTVYGNATVGTPVATVQAVDRDL
GTNAQITYSYSQKVPQETKDLFHLDEVTGVIKLSSKIGGSVLQTHKLTILANGPGCIPAVITALVSIIKV
VFRPPEIVPRYIANEVDGVVYLKELEPVNTPIAFFTIRDPEGKYKINCFLDGEGPFRLAPYKPYNNEYLL
ETTKPMDYEVQSFYEIAVVAWNSEGFHVKRIIKVQLLDDNDNAPVFLQPLIELTIEENNAPNAFLTKLYA
TDADSGEMGRVSYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDCGTPPRESVATVALTV
LDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVMNQSDIFVIDTGKGMLRAKVS
LDREQQSSYTLWVEAVDGGEPALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYA
VDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMV
NLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVESMSCMPTLVALSVISLGSITLVTGMGI
YICLRKGKKHHREDDNLEVQIPLKGKIDLCMRERKPVDISNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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