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Report for CCDS27304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27304.1 Public Mus musculus 14 Pcdh17 23 108 98 CCDS HistoryNCBI Gene:219228Re-query CCDS DB by CCDS ID:27304.1Re-query CCDS DB by GeneID:219228See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071370.6 ENSMUSP00000071325.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071370.6Link to Ensembl Protein Viewer:ENSMUSP00000071325.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071370Re-query CCDS DB by Protein ID:ENSMUSP00000071325
Original member Current member NCBI NM_001013753.2 NP_001013775.2 Accepted alive Link to Nucleotide Sequence:NM_001013753.2Link to Protein Sequence:NP_001013775.2Re-query CCDS DB by Nucleotide ID:NM_001013753Re-query CCDS DB by Protein ID:NP_001013775Link to BLAST:NP_001013775.2

Chromosomal Locations for CCDS 27304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 84446095 84448653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 84477323 84477381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 84477515 84477687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 84532875 84533557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3474 nt):
ATGTACCTTTCCATCTGTTGCTGCTTCCTTTTGTGGGCCCCTGCCCTGACACTCAAAAACCTCAATTACT
CAGTGCCAGAGGAGCAAGGGGCCGGCACGGTGATTGGCAACATCGGCAAGGATGCCCGACTGCAGCCCGG
GCTTCCGCCGGCTGAGCGCGGCAGCGGCAGCGGGAGGAGCAAGTCTGGCAGTTACCGGGTGCTGGAGAAC
TCCGCACCGCATCTGCTGGACGTGGACGCCGACAGCGGGCTCCTCTACACCAAACAGCGCATCGACCGTG
AGTCCTTATGCCGCCACAATGCCAAGTGCCAGCTCTCCCTAGAGGTTTTCGCTAACGACAAGGAGATTTG
CATGATCAAGGTAGAGATCCAGGACATCAACGACAACGCTCCCTCTTTCCCCTCGGATCAGATAGAAATG
GACATCTCAGAGAACGCGGCACCCGGCACCCGCTTCCCCCTCACGAGCGCACACGACCCAGACGCTGGCG
AGAACGGGCTCCGCACCTATCTGCTCACCCGCGATGATCATGGCCTCTTTGCCCTGGACGTCAAGTCCCG
CGGCGACGGCACCAAGTTCCCAGAGCTGGTCATCCAAAAGGCACTGGACCGCGAGCTGCAGAACCACCAC
ACTCTGGTGCTGACCGCCCTAGATGGCGGGGAGCCTCCACGCTCCGCCACCGTACAGATCAATGTGAAGG
TGATCGATTCCAATGACAACAGTCCAGTCTTCGAGGCTCCGTCATACTTGGTGGAACTGCCCGAGAACGC
TCCACTGGGTACCGTGGTCATTGATTTGAACGCCACTGATGCTGATGAAGGTCCCAACGGAGAAGTCCTC
TACTCCTTCAGCAGCTATGTGCCCGACCGCGTGCGGGAGCTCTTCTCCATCGATCCTAAAACTGGCCTGA
TCCGCGTTAAGGGCAACCTGGACTATGAGGAGAACGGCATGTTGGAGATCGACGTGCAGGCCAGAGACCT
AGGACCTAACCCAATCCCAGCCCACTGCAAGGTCACAGTCAAGCTTATCGACCGGAACGATAACGCGCCG
TCCATTGGTTTCGTCTCCGTGCGCCAGGGGGCGCTGAGTGAGGCCGCCCCGCCCGGCACAGTCATCGCCC
TAGTGCGGGTCACTGACCGGGACTCAGGCAAGAATGGGCAGCTTCAGTGTCGGGTTCTAGGTGGAGGAGG
GACTGGAGGTGGCCTGGGGGGTCCCGGTTCCGTCCCCTTCAAGCTTGAAGAGAACTATGACAACTTCTAT
ACCGTGGTGACTGACCGTCCACTGGACCGTGAGACACAAGACGAGTACAATGTGACCATTGTGGCCCGGG
ACGGGGGCTCCCCTCCACTTAACTCCACCAAGTCCTTCGCCGTCAAGATTCTGGATGAGAATGACAATCC
GCCTCGGTTCACCAAAGGACTTTACGTGCTCCAAGTACACGAGAACAACATTCCAGGAGAATACCTCGGG
TCAGTGCTAGCCCAGGATCCCGACCTGGGCCAAAATGGGACAGTGTCATACTCCATTCTTCCTTCACACA
TCGGCGACGTGTCTATTTACACCTATGTGTCCGTGAACCCCACTAACGGGGCCATATATGCCCTACGCTC
CTTTAACTATGAACAAACGAAGGCTTTTGAATTCAAAGTACTGGCTAAGGACTCAGGGGCGCCAGCGCAC
TTGGAGAGCAACGCCACGGTGAGGGTGACGGTTTTAGACGTGAACGACAACGCTCCAGTGATTGTGCTTC
CCACGCTACAGAATGACACAGCTGAGCTGCAGGTCCCGCGCAATGCTGGCCTGGGGTACCTGGTAAGCAC
CGTGCGCGCCCTGGACAGCGACTTTGGAGAGAGCGGGCGCCTCACCTATGAGATCGTGGATGGCAACGAT
GACCACCTGTTTGAGATCGATCCGTCCAGCGGCGAGATCCGCACGCTGCACCCCTTCTGGGAGGATGTGA
CCCCAGTGGTGGAGCTTGTGGTGAAGGTGACCGATCATGGCAAGCCCACCCTTTCCGCTGTGGCCAAACT
TATCATCCGCTCAGTGAGCGGCTCCCTGCCTGAAGGGGTACCGCGAGTGAATGGCGAGCAGCACCACTGG
GACATGTCCCTGCCTCTCATAGTGACACTGAGCACGATTTCTATCATCCTCCTAGCGGCCATGATCACCA
TCGCTGTCAAGTGTAAACGGGAAAACAAGGAGATTCGCACTTACAACTGCCGCATCGCCGAGTACAGCCA
CCCTCAGCTAGGCGGGGGGAAGGGCAAGAAGAAGAAAATCAACAAAAACGATATCATGCTGGTGCAGAGC
GAGGTGGAGGAGAGGAACGCCATGAACGTCATGAACGTGGTGAGCAGTCCCTCCCTGGCCACCTCCCCTA
TGTACTTCGACTACCAAACCCGCCTGCCCCTCAGCTCGCCCCGGTCAGAGGTGATGTATCTTAAGCCAGC
CTCCAACAACCTGACTGTCCCGCAGGGGCACGCAGGCTGCCACACCAGCTTCACCGGACAAGGGACTAAT
TCGAGCGAGACCCCTGCCACTCGGATGTCCATAATTCAGACAGACAATTTTCCCGCAGAGCCCAATTACA
TGGGCAGCAGGCAGCAGTTTGTTCAAAGTAGCTCCACGTTTAAGGACCCAGAAAGAGCCAGCCTGAGAGA
CAGTGGGCACGGGGACAGCGATCAGGCGGACAGTGACCAAGACACTAACAAAGGCTCCTGCTGTGACATG
TCGGTTAGGGAGGCACTCAAGATGAAAACTACTTCAACTAAAAGTCAGCCACTCGAACAAGAACCAGAAG
AGTGCATTAATTGCACAGATGAATGCCGAGTGCTTGGTCATTCTGATAGGTGTTGGATGCCACAGTTCCC
TGCAGCCAATCAGGCTGAAAATGCAGATTACCGCACAAATCTCTTTGTACCCACAGTTGAAGCTAATGTT
GAGACTGAGACTTACGAAACTGTGAATCCCACTGGGAAAAAGACTTTTTGTACATTTGGAAAAGACAAGC
GAGAGCACACTATTCTCATTGCCAATGTGAAACCTTATTTAAAAGCCAAACGTGCCCTGAGCCCTCTCCT
CCAAGAGGTCCCCTCAGCATCTAGCAGCCCAACCAAGGCATGCATTGAGCCTTGCGCCTCAACAAAAGGC
TCCCTGGATGGCTGTGAAGCAAAACCTGGGCCCTTAGCAGAAGCAAGCAGCTCCTACCTGCCCACTGACA
GTCAGTACCCTTCACCCAGTAAGCAACCAAGAGACCCTTCCTTCATGGCTTCTGATCAGATGGCAAGGGT
CTTCGCGGATGTGCATTCCAGAGCCCGTAGGGCTTCCAGCGAGATGGGAGCTGTGTTGGAGCAGCTGGAG
CAGCCCAACAGGGATCTGGGCCGAGAGTCCGTGGATGCCGAAGAAGTTGTGAGAGAGATTGATAAGCTCT
TGCAGGACTGCCGGGGAAATGACCCTGTGGCTGTGAGAAAGTGA

Translation (1157 aa):
MYLSICCCFLLWAPALTLKNLNYSVPEEQGAGTVIGNIGKDARLQPGLPPAERGSGSGRSKSGSYRVLEN
SAPHLLDVDADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKVEIQDINDNAPSFPSDQIEM
DISENAAPGTRFPLTSAHDPDAGENGLRTYLLTRDDHGLFALDVKSRGDGTKFPELVIQKALDRELQNHH
TLVLTALDGGEPPRSATVQINVKVIDSNDNSPVFEAPSYLVELPENAPLGTVVIDLNATDADEGPNGEVL
YSFSSYVPDRVRELFSIDPKTGLIRVKGNLDYEENGMLEIDVQARDLGPNPIPAHCKVTVKLIDRNDNAP
SIGFVSVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVLGGGGTGGGLGGPGSVPFKLEENYDNFY
TVVTDRPLDRETQDEYNVTIVARDGGSPPLNSTKSFAVKILDENDNPPRFTKGLYVLQVHENNIPGEYLG
SVLAQDPDLGQNGTVSYSILPSHIGDVSIYTYVSVNPTNGAIYALRSFNYEQTKAFEFKVLAKDSGAPAH
LESNATVRVTVLDVNDNAPVIVLPTLQNDTAELQVPRNAGLGYLVSTVRALDSDFGESGRLTYEIVDGND
DHLFEIDPSSGEIRTLHPFWEDVTPVVELVVKVTDHGKPTLSAVAKLIIRSVSGSLPEGVPRVNGEQHHW
DMSLPLIVTLSTISIILLAAMITIAVKCKRENKEIRTYNCRIAEYSHPQLGGGKGKKKKINKNDIMLVQS
EVEERNAMNVMNVVSSPSLATSPMYFDYQTRLPLSSPRSEVMYLKPASNNLTVPQGHAGCHTSFTGQGTN
SSETPATRMSIIQTDNFPAEPNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDM
SVREALKMKTTSTKSQPLEQEPEECINCTDECRVLGHSDRCWMPQFPAANQAENADYRTNLFVPTVEANV
ETETYETVNPTGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQEVPSASSSPTKACIEPCASTKG
SLDGCEAKPGPLAEASSSYLPTDSQYPSPSKQPRDPSFMASDQMARVFADVHSRARRASSEMGAVLEQLE
QPNRDLGRESVDAEEVVREIDKLLQDCRGNDPVAVRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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