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Report for CCDS26904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26904.1 Public Mus musculus 14 Glt8d1 23 108 98 CCDS HistoryNCBI Gene:76485Re-query CCDS DB by CCDS ID:26904.1Re-query CCDS DB by GeneID:76485See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022476.8 ENSMUSP00000022476.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022476.8Link to Ensembl Protein Viewer:ENSMUSP00000022476.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022476Re-query CCDS DB by Protein ID:ENSMUSP00000022476
Original member Current member EBI ENSMUST00000168584.8 ENSMUSP00000129323.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168584.8Link to Ensembl Protein Viewer:ENSMUSP00000129323.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168584Re-query CCDS DB by Protein ID:ENSMUSP00000129323
Original member NCBI NM_001165930.1 NP_001159402.1 Updated not alive Link to Nucleotide Sequence:NM_001165930.1Link to Protein Sequence:NP_001159402.1Re-query CCDS DB by Nucleotide ID:NM_001165930Re-query CCDS DB by Protein ID:NP_001159402
Current member NCBI NM_001165930.2 NP_001159402.1 Accepted alive Link to Nucleotide Sequence:NM_001165930.2Link to Protein Sequence:NP_001159402.1Re-query CCDS DB by Nucleotide ID:NM_001165930Re-query CCDS DB by Protein ID:NP_001159402Link to BLAST:NP_001159402.1
Original member NCBI NM_029626.2 NP_083902.2 Updated not alive Link to Nucleotide Sequence:NM_029626.2Link to Protein Sequence:NP_083902.2Re-query CCDS DB by Nucleotide ID:NM_029626Re-query CCDS DB by Protein ID:NP_083902
Current member NCBI NM_029626.3 NP_083902.2 Accepted alive Link to Nucleotide Sequence:NM_029626.3Link to Protein Sequence:NP_083902.2Re-query CCDS DB by Nucleotide ID:NM_029626Re-query CCDS DB by Protein ID:NP_083902Link to BLAST:NP_083902.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159402.1 371 Q6NSU3-1 371 100% 0 0
NP_083902.2 371 Q6NSU3-1 371 100% 0 0

Chromosomal Locations for CCDS 26904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31006497 31006512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31006633 31006731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31008654 31008867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31009735 31009852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31010081 31010165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31010297 31010409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31010864 31011030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31011121 31011233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31011485 31011675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGTCATTCCGTAAAGTGAACATCATCATCTGGGTCCTGGCTGTTGTTCTCTTCTTACTGGTTTTGCACC
ATAACTTCCTCAGCTTGAGCAGTTTGTTAAAGAATGACATTTCAGATTCGGGAATTGTGGGGCTTCAGCC
CATAGACTTTGTCGCCAGTGCTCATCAGCATCCAGTGAGTGAGAGGCAAGAGGAGATTCCCGTGGTTATT
GCTGCCTCTGAAGACAGGCTGGGTGGGACCATTGCAGCCATAAACAGCGTTCATCAAAACACGCGCTCCA
ATGTGATGTTTTACATTGTTACATTCAACAGCACAGCAGACCATCTCCGGTCCTGGCTTAACAGTGGTTC
CTTGAAAAGCATCAGGTACAAAATTGTAAATTTTGACACTAAACTTTTGGAAGGGAAAGTAAAGCAGGAT
CCTGACCAGGGGGAGTCCATGAAACCATTAACCTTTGCAAGGTTCTACTTGCCAATTCTGGTTCCCAGTG
CAAAGAAAGCCATATACATGGATGATGATGTCATTGTACAAGGTGACATACTTGCCTTGTACAATACACC
ACTGAAGCCAGGACATGCTGCTGCGTTTTCAGAAGATTGTGACTCAGCCTCCACTAAAGTCATCATCCGG
GGAGCAGGGAACCAGTACAATTACATTGGTTATCTTGACTATAAAAAGGAAAGAATTCGTAAACTTTCCA
TGAAAGCCAGCACCTGTTCCTTTAATCCTGGAGTTTTTGTTGCAAACTTGACTGAATGGAAAAGACAGAA
TGTAACTAACCAGTTGGAAAAATGGATGAAGCTCAATGTAGAAGAGGGATTATACAGCAGAACTCTGGCA
GGCAGCATCACCACACCTCCTCTGCTTATCGTATTTTATCAGCAGCATTCCACCATTGACCCTATGTGGA
ATGTCCGCCATCTTGGTTCCAGTGCTGGAAAACGGTACTCACCCCAGTTTGTAAAAGCTGCCAAGTTACT
TCACTGGAATGGTCACTTCAAGCCTTGGGGAAGAACTGCTTCATATGCTGATGTTTGGGAAAAGTGGTAT
ATTCCAGACCCAACAGGAAAATTCAGTTTAATCCGAAGACATATGGATACCTCAAACATAAAGTGA

Translation (371 aa):
MSFRKVNIIIWVLAVVLFLLVLHHNFLSLSSLLKNDISDSGIVGLQPIDFVASAHQHPVSERQEEIPVVI
AASEDRLGGTIAAINSVHQNTRSNVMFYIVTFNSTADHLRSWLNSGSLKSIRYKIVNFDTKLLEGKVKQD
PDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILALYNTPLKPGHAAAFSEDCDSASTKVIIR
GAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNVTNQLEKWMKLNVEEGLYSRTLA
GSITTPPLLIVFYQQHSTIDPMWNVRHLGSSAGKRYSPQFVKAAKLLHWNGHFKPWGRTASYADVWEKWY
IPDPTGKFSLIRRHMDTSNIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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