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Report for CCDS43998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43998.1 Public Homo sapiens X RTL8A 24 110 108 CCDS HistoryNCBI Gene:26071Re-query CCDS DB by CCDS ID:43998.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370775.3 ENSP00000375267.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370775.3Link to Ensembl Protein Viewer:ENSP00000375267.1Re-query CCDS DB by Nucleotide ID:ENST00000370775Re-query CCDS DB by Protein ID:ENSP00000375267
Original member Current member NCBI NM_001078172.2 NP_001071640.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001078172.2Link to Protein Sequence:NP_001071640.1Re-query CCDS DB by Nucleotide ID:NM_001078172Re-query CCDS DB by Protein ID:NP_001071640Link to BLAST:NP_001071640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071640.1 113 Q9BWD3 113 100% 0 0

Chromosomal Locations for CCDS 43998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135051767 135052108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGGACGGTCGGGTGCAGCTGATGAAGGCCCTCCTGGCCGGGCCCCTCCGGCCCGCGGCGCGTCGCTGGA
GGAACCCGATTCCCTTTCCCGAGACGTTTGACGGAGATACCGACCGACTCCCGGAGTTCATCGTGCAGAC
GAGCTCCTACATGTTCGTGGACGAGAACACGTTCTCCAACGACGCCCTGAAGGTGACGTTCCTCATCACC
CGCCTCACGGGGCCAGCCCTGCAGTGGGTGATCCCCTACATCAGGAAGGAGAGCCCCCTGCTCAATGATT
ACCGGGGCTTCCTGGCCGAGATGAAGCGGGTCTTTGGATGGGAGGAGGACGAGGACTTCTAG

Translation (113 aa):
MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLIT
RLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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