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Report for CCDS50550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50550.1 Public Mus musculus 2 Gtf3c4 23 108 98 CCDS HistoryNCBI Gene:269252Re-query CCDS DB by CCDS ID:50550.1Re-query CCDS DB by GeneID:269252See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171404.7 ENSMUSP00000132171.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171404.7Link to Ensembl Protein Viewer:ENSMUSP00000132171.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171404Re-query CCDS DB by Protein ID:ENSMUSP00000132171
Original member Current member NCBI NM_001166033.1 NP_001159505.1 Accepted alive Link to Nucleotide Sequence:NM_001166033.1Link to Protein Sequence:NP_001159505.1Re-query CCDS DB by Nucleotide ID:NM_001166033Re-query CCDS DB by Protein ID:NP_001159505Link to BLAST:NP_001159505.1

Chromosomal Locations for CCDS 50550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28826733 28826797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28827478 28827566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28830502 28830632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28833550 28835295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGCTAGACAGGATGTTCAACCCCGAGGGGAAGGCCTTGCCCCCAATGCGGGGTTTCAAATACACTAGCT
GGTCTCCAATGGGTTGTGATGCAAATGGCAGGTGCCTCTTGGCAGCACTGACCATGGACAATCGCCTGAC
TGTGCAGGTGAACCTCAACAGACTCCAGTGGGTTCAGCTGGTTGATCTGACGGAGATTTATGGAGACCGT
CTTTATGAGACTAGTTATAGACTGTCTAAAAATGAGGCTCCTGAGGGAAATCTCGGGGATTTTGCTGAGT
TTCAGAGGAGACACAGTATGCAGACCCCAGTCAGAATGGAATGGTCGAGTATCTGTACCACTCAGCAGGT
CAAGCACAACAACGAGTGCCGGGATGTGAGCAGCGTGCTGCTGGCTGTCCTCTTTGAGAACGGGAATATA
GCTGTGTGGCAGTTCCAGCTGCCATTCGTGGGGAAGGAGTCCATCTCTTCATGCAACACTATTGAGTCAG
GAATCAGCTCCCCCAGTGTTTTGTTTTGGTGGGAATATGAGCACAATAATAGGAAAATGAGTGGCCTTAT
TGTGGGCAGTGCTTTTGGACCTGTAAAAATTCTCCCTGTCAATCTCAAAGCAGTGAAAGGCTACTTTACT
TTAAGGCAGCCTGTTGTCTTGTGGAAAGAAATGGACAAGTTACCTGTGCACAGCATCAAATGTGTGCCAC
TTTACCACCCCTACCAGAAGTGTAGCTGTAGCTTAGTGGTAGCTGCAAGAGGCTCCTATGTGTTTTGGTG
TCTTCTTCTGATCTCCAAGGCAGGTCTGAATGTTCACAATTCCCACGTCACAGGCCTCCACTCACTGCCC
ATCGTCTCCATTACTGCAGACAAGCAGAATGGAACAGTGTACACCTGCTCTAGTGATGGGAAGGTGAGGC
AGTTGATTCCCATTTTCACAGATGTTGCATTAAAGTTTGAACACCAGCTGATTAAGCTCTCAGATGTCTT
TGGCTCAGTGAGGACTCACGGCATTGCAGTGAGTCCCTGTGGTGCTTATCTGGCCATCATCACCACTGAG
GGCATGATGAATGGCCTCCATCCTGTGAATAAGAACTACCAGGTCCAGTTTGTTACTCTGAAGACCTTTG
AAGAGGCAGCTGCTCAGCTCTTGGAGTCTTCAGTTCAGAATCTCTTTAAGCAGGTAGACTTGATCGACCT
GGTCCGCTGGAAAATTTTAAAAGATAAACATATTCCTCAGTTTTTACATGAAGCATTGGAAAAAAAGATT
GAAAGCAGCGGGGTTACCTATTTTTGGCGTTTTAAGCTTTTCCTTCTAAGGATTTTGTATCAGTCAATGC
AGAAATCCCCTTCCGAGGCCTTATGGAAACCCACCCATGAGGACTCAAAAATCTTACTGGTTGACTCACC
TGGGATGGGCGACGGTGAGGATGAGCAGCAAGAAGAAGGTACTTCCAAGCAGGGGACTAAGGCTGGCCTG
CAGGAGAAGAGCAAAGAAGGTGACACAGAGGAGACCCCTGAGGACTCACTCACTGCAGGGGGAGACACCG
GAGGCCGTGAACCTGTAGAGGAAAAGCTCCTTGAGATCCAAGGGAAGATTGAGGCTGTGGAGATGCACCT
GACCAGGGAGCACATGAAGCGGGTCCTGGGAGAAGTGTACCTGCACACCTGGATCACAGAGAACACCAGC
ATACCCACCAGAGGGCTCTGTAACTTCCTGATGTCTGATGAGGATTATGATGACAGGACAGCACAGGTCT
TGATTGGACATATCTCCAAGAAGATGAACAAACAGACCTTCCCTGAGCGCTGCAGTCTGTGTAAGGAGAT
CTTACCATTCACAGATCGCAAGCAAGCTGTTTGTTCCAATGGGCACATCTGGCTCCGGTGCTTTCTAACC
TACCAGTCCTGCCAGAGCTTGATATACAGACGGTGTTTGCTCCATGACAGCATCGCCAGGCATCCTGTTC
CAGAAGATCCTGACTGGATTAAGAGGTTGCTGCAGAGTCCTTGTCCTTTCTGTGATTCTCCTGTCTTCTG
A

Translation (676 aa):
MLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTMDNRLTVQVNLNRLQWVQLVDLTEIYGDR
LYETSYRLSKNEAPEGNLGDFAEFQRRHSMQTPVRMEWSSICTTQQVKHNNECRDVSSVLLAVLFENGNI
AVWQFQLPFVGKESISSCNTIESGISSPSVLFWWEYEHNNRKMSGLIVGSAFGPVKILPVNLKAVKGYFT
LRQPVVLWKEMDKLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTGLHSLP
IVSITADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGIAVSPCGAYLAIITTE
GMMNGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLHEALEKKI
ESSGVTYFWRFKLFLLRILYQSMQKSPSEALWKPTHEDSKILLVDSPGMGDGEDEQQEEGTSKQGTKAGL
QEKSKEGDTEETPEDSLTAGGDTGGREPVEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTS
IPTRGLCNFLMSDEDYDDRTAQVLIGHISKKMNKQTFPERCSLCKEILPFTDRKQAVCSNGHIWLRCFLT
YQSCQSLIYRRCLLHDSIARHPVPEDPDWIKRLLQSPCPFCDSPVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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