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Report for CCDS15847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15847.1 Public Mus musculus 2 Gtf3c4 23 108 98 CCDS HistoryNCBI Gene:269252Re-query CCDS DB by CCDS ID:15847.1Re-query CCDS DB by GeneID:269252See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037117.5 ENSMUSP00000042265.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037117.5Link to Ensembl Protein Viewer:ENSMUSP00000042265.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037117Re-query CCDS DB by Protein ID:ENSMUSP00000042265
Original member Current member NCBI NM_172977.3 NP_766565.2 Accepted alive Link to Nucleotide Sequence:NM_172977.3Link to Protein Sequence:NP_766565.2Re-query CCDS DB by Nucleotide ID:NM_172977Re-query CCDS DB by Protein ID:NP_766565Link to BLAST:NP_766565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766565.2 817 Q8BMQ2-1 817 100% 0 0

Chromosomal Locations for CCDS 15847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28826733 28826797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28827478 28827566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28830502 28830632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28833550 28835373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28839883 28840227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2454 nt):
ATGAGCGAGGCGGACCAGGCCCTGGTGGGGCCCAAGGCCGACGAGCCCTCGCCGCCCGCAGAGGAGAAGG
ACGAAGGGGGCGGGAAGGAGGCGGCTGCCGACGCGGCCCCCGGGCCCAGCGCCTCGTTTCGCCTCATGGT
GACTCGGCGGGAGCCTGCCGTGAAGCTGCAATACGCGGTGAGCGGGTTAGAGCCGCTCTCCTGGTCTGAG
GACCACCGCGTGTCTGTGTCCACGGCTCGCAGCGTCGCCGTGCTGGAGCTTATCTGCGATGTGCACAACC
CAGGCCAGGATCTGGTGATCCACCGCACCTCGGTACCCGCACCTCTCAACAGCTGCCTCCTCAAGGTTGG
CTCAAAAACAGAAGTTGCTGAGTGCAAGGAAAAGTTCGCTTCCTCTAAAGACCCCACCATCAGCCAGACT
TTCATGCTAGACAGGATGTTCAACCCCGAGGGGAAGGCCTTGCCCCCAATGCGGGGTTTCAAATACACTA
GCTGGTCTCCAATGGGTTGTGATGCAAATGGCAGGTGCCTCTTGGCAGCACTGACCATGGACAATCGCCT
GACTGTGCAGGTGAACCTCAACAGACTCCAGTGGGTTCAGCTGGTTGATCTGACGGAGATTTATGGAGAC
CGTCTTTATGAGACTAGTTATAGACTGTCTAAAAATGAGGCTCCTGAGGGAAATCTCGGGGATTTTGCTG
AGTTTCAGAGGAGACACAGTATGCAGACCCCAGTCAGAATGGAATGGTCGAGTATCTGTACCACTCAGCA
GGTCAAGCACAACAACGAGTGCCGGGATGTGAGCAGCGTGCTGCTGGCTGTCCTCTTTGAGAACGGGAAT
ATAGCTGTGTGGCAGTTCCAGCTGCCATTCGTGGGGAAGGAGTCCATCTCTTCATGCAACACTATTGAGT
CAGGAATCAGCTCCCCCAGTGTTTTGTTTTGGTGGGAATATGAGCACAATAATAGGAAAATGAGTGGCCT
TATTGTGGGCAGTGCTTTTGGACCTGTAAAAATTCTCCCTGTCAATCTCAAAGCAGTGAAAGGCTACTTT
ACTTTAAGGCAGCCTGTTGTCTTGTGGAAAGAAATGGACAAGTTACCTGTGCACAGCATCAAATGTGTGC
CACTTTACCACCCCTACCAGAAGTGTAGCTGTAGCTTAGTGGTAGCTGCAAGAGGCTCCTATGTGTTTTG
GTGTCTTCTTCTGATCTCCAAGGCAGGTCTGAATGTTCACAATTCCCACGTCACAGGCCTCCACTCACTG
CCCATCGTCTCCATTACTGCAGACAAGCAGAATGGAACAGTGTACACCTGCTCTAGTGATGGGAAGGTGA
GGCAGTTGATTCCCATTTTCACAGATGTTGCATTAAAGTTTGAACACCAGCTGATTAAGCTCTCAGATGT
CTTTGGCTCAGTGAGGACTCACGGCATTGCAGTGAGTCCCTGTGGTGCTTATCTGGCCATCATCACCACT
GAGGGCATGATGAATGGCCTCCATCCTGTGAATAAGAACTACCAGGTCCAGTTTGTTACTCTGAAGACCT
TTGAAGAGGCAGCTGCTCAGCTCTTGGAGTCTTCAGTTCAGAATCTCTTTAAGCAGGTAGACTTGATCGA
CCTGGTCCGCTGGAAAATTTTAAAAGATAAACATATTCCTCAGTTTTTACATGAAGCATTGGAAAAAAAG
ATTGAAAGCAGCGGGGTTACCTATTTTTGGCGTTTTAAGCTTTTCCTTCTAAGGATTTTGTATCAGTCAA
TGCAGAAATCCCCTTCCGAGGCCTTATGGAAACCCACCCATGAGGACTCAAAAATCTTACTGGTTGACTC
ACCTGGGATGGGCGACGGTGAGGATGAGCAGCAAGAAGAAGGTACTTCCAAGCAGGGGACTAAGGCTGGC
CTGCAGGAGAAGAGCAAAGAAGGTGACACAGAGGAGACCCCTGAGGACTCACTCACTGCAGGGGGAGACA
CCGGAGGCCGTGAACCTGTAGAGGAAAAGCTCCTTGAGATCCAAGGGAAGATTGAGGCTGTGGAGATGCA
CCTGACCAGGGAGCACATGAAGCGGGTCCTGGGAGAAGTGTACCTGCACACCTGGATCACAGAGAACACC
AGCATACCCACCAGAGGGCTCTGTAACTTCCTGATGTCTGATGAGGATTATGATGACAGGACAGCACAGG
TCTTGATTGGACATATCTCCAAGAAGATGAACAAACAGACCTTCCCTGAGCGCTGCAGTCTGTGTAAGGA
GATCTTACCATTCACAGATCGCAAGCAAGCTGTTTGTTCCAATGGGCACATCTGGCTCCGGTGCTTTCTA
ACCTACCAGTCCTGCCAGAGCTTGATATACAGACGGTGTTTGCTCCATGACAGCATCGCCAGGCATCCTG
TTCCAGAAGATCCTGACTGGATTAAGAGGTTGCTGCAGAGTCCTTGTCCTTTCTGTGATTCTCCTGTCTT
CTGA

Translation (817 aa):
MSEADQALVGPKADEPSPPAEEKDEGGGKEAAADAAPGPSASFRLMVTRREPAVKLQYAVSGLEPLSWSE
DHRVSVSTARSVAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFASSKDPTISQT
FMLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTMDNRLTVQVNLNRLQWVQLVDLTEIYGD
RLYETSYRLSKNEAPEGNLGDFAEFQRRHSMQTPVRMEWSSICTTQQVKHNNECRDVSSVLLAVLFENGN
IAVWQFQLPFVGKESISSCNTIESGISSPSVLFWWEYEHNNRKMSGLIVGSAFGPVKILPVNLKAVKGYF
TLRQPVVLWKEMDKLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTGLHSL
PIVSITADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGIAVSPCGAYLAIITT
EGMMNGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLHEALEKK
IESSGVTYFWRFKLFLLRILYQSMQKSPSEALWKPTHEDSKILLVDSPGMGDGEDEQQEEGTSKQGTKAG
LQEKSKEGDTEETPEDSLTAGGDTGGREPVEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENT
SIPTRGLCNFLMSDEDYDDRTAQVLIGHISKKMNKQTFPERCSLCKEILPFTDRKQAVCSNGHIWLRCFL
TYQSCQSLIYRRCLLHDSIARHPVPEDPDWIKRLLQSPCPFCDSPVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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