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Report for CCDS18046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18046.1 Public Mus musculus 4 Tmem215 23 108 98 CCDS HistoryNCBI Gene:320500Re-query CCDS DB by CCDS ID:18046.1Re-query CCDS DB by GeneID:320500See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049655.2 ENSMUSP00000052129.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049655.2Link to Ensembl Protein Viewer:ENSMUSP00000052129.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000049655Re-query CCDS DB by Protein ID:ENSMUSP00000052129
Original member Current member EBI ENSMUST00000179526.1 ENSMUSP00000136595.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179526.1Link to Ensembl Protein Viewer:ENSMUSP00000136595.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179526Re-query CCDS DB by Protein ID:ENSMUSP00000136595
Original member Current member NCBI NM_001166009.1 NP_001159481.1 Accepted alive Link to Nucleotide Sequence:NM_001166009.1Link to Protein Sequence:NP_001159481.1Re-query CCDS DB by Nucleotide ID:NM_001166009Re-query CCDS DB by Protein ID:NP_001159481Link to BLAST:NP_001159481.1
Original member Current member NCBI NM_177175.4 NP_796149.2 Accepted alive Link to Nucleotide Sequence:NM_177175.4Link to Protein Sequence:NP_796149.2Re-query CCDS DB by Nucleotide ID:NM_177175Re-query CCDS DB by Protein ID:NP_796149Link to BLAST:NP_796149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159481.1 235 A7E1Z1 235 100% 0 0
NP_796149.2 235 A7E1Z1 235 100% 0 0

Chromosomal Locations for CCDS 18046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40473925 40474632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGCGGCCTGATGACATAAATCCGAGGACTGGGCTGGTGGTGGCCCTGGTCAGTGTTTTCCTGGTCTTTG
GTTTCATGTTCACTGTCTCTGGCATGAAGGGGGAAACTCTGGGGAACATCCCTCTGTTGGCCATCGGGCC
AGCCATCTGCCTACCAGGCATCGCCGCCATTGCTCTGGCCAGGAAAACCGAAGGCTGCACCAAGTGGCCA
GAGAATGAGCTACTCTGGGTCCGCAAGTTACCCTGCTTCCGGAAGCCCAAGGACAAGGAAGTGGTGGAAC
TCCTGAGGACCCCATCAGACCTGGAGTCAGGCAAAGGGAGCTCGGATGAACTGGCTAAGAAGGCAGGCCT
CAGAGGCAAGCAGCTCCCACAGGGACCAGGTGAGGTGCCTATGGCCAGCTCCGTTACTACCCCCACTCCT
ACAGAGGAAGGAGAATGCCAGAGTCTAGTCCAGAGTGGGCGGCAGGAAGAGACATCCAGATACCTGGATG
GCTATTGCCCCTCGGCCAGTTCCCTCGCCTACAGTGCCTTGGATGCCAAGTGCTCAGCCTGGGACAGATC
TGACCGCCCTGAGCCCGAGGACAGCATCTTCTTTGTGCCCCAGGACAGTATCATCGTTTGCTCCTACAAG
CAAAACAGCCCCTATGACAGATACTGTTGCTACATCAACCAGAGCCAAGGCAGGTGGGACCACGAGACAA
TAGTCTGA

Translation (235 aa):
MRPDDINPRTGLVVALVSVFLVFGFMFTVSGMKGETLGNIPLLAIGPAICLPGIAAIALARKTEGCTKWP
ENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSDELAKKAGLRGKQLPQGPGEVPMASSVTTPTP
TEEGECQSLVQSGRQEETSRYLDGYCPSASSLAYSALDAKCSAWDRSDRPEPEDSIFFVPQDSIIVCSYK
QNSPYDRYCCYINQSQGRWDHETIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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