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Report for CCDS51287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51287.1 Public Mus musculus 4 Or10ak7 23 108 98 CCDS HistoryNCBI Gene:258394Re-query CCDS DB by CCDS ID:51287.1Re-query CCDS DB by GeneID:258394See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081960.4 ENSMUSP00000080626.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081960.4Link to Ensembl Protein Viewer:ENSMUSP00000080626.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000081960Re-query CCDS DB by Protein ID:ENSMUSP00000080626
Original member Current member NCBI NM_146399.2 NP_666511.2 Accepted alive Link to Nucleotide Sequence:NM_146399.2Link to Protein Sequence:NP_666511.2Re-query CCDS DB by Nucleotide ID:NM_146399Re-query CCDS DB by Protein ID:NP_666511Link to BLAST:NP_666511.2

Chromosomal Locations for CCDS 51287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118933899 118934840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGATTCCAGAGCAGAACCAAAGTTGGGTTTCAGAGTTCATCCTGATTGGCTTCTCCAGTGACCCCACGA
CCAACAGCATCCTCTTCATTGTCTTCCTTCTCATTTACCTGAGCTCAGTCCTGGGCAATGGGCTCATCAT
CCTGCTGGTCTGCCTGGACACACAGCTGCACACTCCCATGTACTTCTTCCTCTGTACCCTCTCCCTGTTG
GATATGAGCTATGTCACCACCACCATGCCCCAGATGTTGGTGCATCTTCTTGCTCACTCTCAGACCATCT
CCTTTGCTGGCTGCTGGCTGCAGATGTATGTGTTTGGTGCCCTGGGTATAACTGAGTGTACTTTCTTCGT
TGTCATGGCTTATGACCGGTATGTGGCCATATGCTATCCATTGCGCTATACTGTCATCCTTAACTGGGGC
TTGTGCATACGGTTGGCAGCAGGGTCTTGGATCTGTGGTTTCTTTTCCTCTTTATTGCATACTTTCTTCA
CCATGAGTCTGCCATACTGTGGGCCCAACAGGGTCAACCACTACTTCTGTGAAGGTCCTTCAGTGCGTAG
CTTGGCTTGCATGGATACCCACCTCATTGAGATGGTGGACTTTGTGTTGAGTGTTTTTGTGGTTGTTATT
CCAATTTCCCTCATTGTGGCCTCCTATATTCGTATTGCCATGGCAATTCTCAAAATCAAGTCCACCCAGG
GGCGCTGCAAGGCTTTCTCTACCTGTGCCTCCCACCTGACTGTGGTCACATTCTTTTATGCTCCAGCCAC
TTACATCTACCTTAGGCCCAACTCCAGCTACTCCCCTGAGCGAGACAAGCAGGTCTCACTCTTTTACAAT
GCCTTCACAGCCTTGCTCAACCCTGTGGTCTACAGTCTGAGGAACAAGGACATCAAGAGGGCATTTCTCA
AGGTGATGGGACATAGTAGGCTGGACCAGTGA

Translation (313 aa):
MIPEQNQSWVSEFILIGFSSDPTTNSILFIVFLLIYLSSVLGNGLIILLVCLDTQLHTPMYFFLCTLSLL
DMSYVTTTMPQMLVHLLAHSQTISFAGCWLQMYVFGALGITECTFFVVMAYDRYVAICYPLRYTVILNWG
LCIRLAAGSWICGFFSSLLHTFFTMSLPYCGPNRVNHYFCEGPSVRSLACMDTHLIEMVDFVLSVFVVVI
PISLIVASYIRIAMAILKIKSTQGRCKAFSTCASHLTVVTFFYAPATYIYLRPNSSYSPERDKQVSLFYN
AFTALLNPVVYSLRNKDIKRAFLKVMGHSRLDQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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